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G3 (Bethesda, Md.) Dec 2021Papiliotrema terrestris strain LS28 is a biocontrol agent selected for its antagonistic activity against several plant pathogens both in the field and postharvest. The...
Papiliotrema terrestris strain LS28 is a biocontrol agent selected for its antagonistic activity against several plant pathogens both in the field and postharvest. The availability of a genome sequencing sets the foundation for the identification of the genetic mechanisms of its antagonistic activity. The genome size is 21.29 Mbp with a G+C content of 58.65%, and genome annotation predicts 8,626 protein-encoding genes. Phylogenetic analysis based on whole-genome data confirms that P. terrestris is a Tremellomycetes more closely related to Papiliotrema flavescens than Papiliotrema laurentii.
Topics: Basidiomycota; High-Throughput Nucleotide Sequencing; Phylogeny; Saccharomyces cerevisiae; Sequence Analysis, DNA
PubMed: 34534326
DOI: 10.1093/g3journal/jkab332 -
Fungal Genetics and Biology : FG & B Nov 2020Oleaginous yeasts have stood out due to their ability to accumulate oil, which can be used for fatty acid-derived biofuel production. Papiliotrema laurentii UFV-1 is...
Oleaginous yeasts have stood out due to their ability to accumulate oil, which can be used for fatty acid-derived biofuel production. Papiliotrema laurentii UFV-1 is capable of starting the lipid accumulation in the late exponential growth phase and achieves maximum lipid content at 48 h of growth; it is, therefore, interesting to study how its oleaginous phenotype is regulated. Herein, we provide for the first time insights into the regulation of this phenotype in P. laurentii UFV-1. We sequenced and assembled its genome, performed comparative genomic analyses and investigated its phylogenetic relationships with other yeasts. Gene expression and metabolomic analyses were carried out on the P. laurentii UFV-1 cultivated under a nitrogen-limiting condition. Our results indicated that the lipogenesis of P. laurentii might have taken place during evolution after the divergence of genera in the phylum Basidiomycota. Metabolomic data indicated the redirection of the carbon flux towards fatty acid synthesis in response to the nitrogen limitation. Furthermore, purine seems to be catabolized to recycle nitrogen and leucine catabolization may provide acetyl-CoA for fatty acid synthesis. Analyses of the expression of genes encoding certain enzymes involved with the oleaginous phenotype indicated that the NADP-dependent malic enzyme seems to play an important role in the supply of NADPH for fatty acid synthesis. There was a surprising decrease in the expression of the ACC1 gene, which encodes acetyl-CoA carboxylase, during lipid accumulation. Taken together, our results provided a basis for understanding lipid accumulation in P. laurentii under nitrogen limiting conditions.
Topics: Basidiomycota; Fatty Acids; Gene Expression Regulation, Fungal; Lipid Metabolism; Lipids; Nitrogen; Phenotype; Phylogeny
PubMed: 32911061
DOI: 10.1016/j.fgb.2020.103456 -
Fungal Genetics and Biology : FG & B Jan 2023The production of yeast oil from lignocellulosic biomasses is impaired by inhibitors formed during the pretreatment step, mainly acetic acid. Herein, we applied Adaptive...
The production of yeast oil from lignocellulosic biomasses is impaired by inhibitors formed during the pretreatment step, mainly acetic acid. Herein, we applied Adaptive Laboratory Evolution (ALE) to select three Acetic acid Tolerant Strains (ATS) of P. laurentii UFV-1. Different phenotypes emerged alongside evolution. The ATS II presented trade-offs in the absence of acetic acid, suggesting that it displays a specialized phenotype of tolerance to growth on organic acids. On the other hand, ATS I and ATS III presented phenotypes associated with the behavior of generalists. ATS I was considered the most promising evolved strain as it displayed the oleaginous phenotype in all conditions tested. Thus, we applied whole-genome sequencing to detect the mutations that emerged in this strain during the ALE. We found alterations in genes encoding proteins involved in different cellular functions, including multidrug resistance (MDR) transporters, energy metabolism, detoxification, coenzyme recycling, and cell envelope remodeling. To evaluate acetic acid stress responses, both parental and ATS I strains were cultivated in chemostat mode in the absence and presence of acetic acid. In contrast to ATS I, the parental strain presented alterations in the cell envelope and cell size under acetic acid stress conditions. Furthermore, the parental strain and the ATS I presented differences regarding acetic acid assimilation. Contrary to the parental strain, the ATS I displayed an increase in unsaturated fatty acid content irrespective of acetic acid stress, which might be related to improved tolerance to acetic acid. Altogether, these results provided insights into the mechanisms involved with the acetic acid tolerance displayed by ATS I and the responses of P. laurentii to this stressful condition.
Topics: Acetic Acid; Saccharomyces cerevisiae; Phenotype; Membrane Transport Proteins
PubMed: 36528339
DOI: 10.1016/j.fgb.2022.103765 -
The Brazilian Journal of Infectious... 2019Papiliotrema laurentii is one of several non-neoformans cryptococci that have rarely been associated with human infection, since it was previously considered saprophyte...
BACKGROUND
Papiliotrema laurentii is one of several non-neoformans cryptococci that have rarely been associated with human infection, since it was previously considered saprophyte and thought to be non-pathogenic to humans. Nevertheless, increasing number of reports of human infection have emerged in recent years, mostly in oncologic patients.
AIM
To report a case of a female patient with pyloric obstructive cancer with a catheter-related Papiliotrema laurentii blood stream infection and systematically review the available evidence on P. laurentii infection in humans.
METHODS
Retrieval of studies was based on Medical Subject Headings and Health Sciences Descriptors, which were combined using Boolean operators. Searches were run on the electronic databases Scopus, Web of Science, MEDLINE (PubMed), BIREME (Biblioteca Regional de Medicina), LILACS (Latin American and Caribbean Health Sciences Literature), Cochrane Library for Systematic Reviews and Opengray.eu. There was no language or date of publication restrictions. The reference lists of the studies retrieved were searched manually.
RESULTS
The search strategy retrieved 1703 references. In the final analysis, 31 references were included, with the description of 35 cases. Every patient but one had a previous co-morbidity - 48.4 % of patients had a neoplasm. Amphotericin B was the most used treatment and only a single case of resistance to it was reported. Most patients were cured of the infection.
CONCLUSION
P. laurentii infection in humans is usually associated to neoplasia and multiple co-morbidities, and amphotericin B seems to be a reliable agent for treatment.
Topics: Aged; Amphotericin B; Anti-Bacterial Agents; Bacteremia; Biopsy; Catheter-Related Infections; Cryptococcus; Female; Fluconazole; Humans; Piperacillin, Tazobactam Drug Combination; Stomach Neoplasms; Tomography, X-Ray Computed; Vancomycin
PubMed: 31738886
DOI: 10.1016/j.bjid.2019.10.005 -
Gene Mar 2018Nitrogen is a key nutrient for all cell forms. Most organisms respond to nitrogen scarcity by slowing down their growth rate. On the contrary, our previous studies have...
Nitrogen is a key nutrient for all cell forms. Most organisms respond to nitrogen scarcity by slowing down their growth rate. On the contrary, our previous studies have shown that Papiliotrema laurentii strain RY1 has a robust growth under nitrogen starvation. To understand the global regulation that leads to such an extraordinary response, we undertook a de novo approach for transcriptome analysis of the yeast. Close to 33 million sequence reads of high quality for nitrogen limited and enriched condition were generated using Illumina NextSeq500. Trinity analysis and clustered transcripts annotation of the reads produced 17,611 unigenes, out of which 14,157 could be annotated. Gene Ontology term analysis generated 44.92% cellular component terms, 39.81% molecular function terms and 15.24% biological process terms. The most over represented pathways in general were translation, carbohydrate metabolism, amino acid metabolism, general metabolism, folding, sorting, degradation followed by transport and catabolism, nucleotide metabolism, replication and repair, transcription and lipid metabolism. A total of 4256 Single Sequence Repeats were identified. Differential gene expression analysis detected 996 P-significant transcripts to reveal transmembrane transport, lipid homeostasis, fatty acid catabolism and translation as the enriched terms which could be essential for Papiliotrema laurentii strain RY1 to adapt during nitrogen deprivation. Transcriptome data was validated by quantitative real-time PCR analysis of twelve transcripts. To the best of our knowledge, this is the first report of Papiliotrema laurentii strain RY1 transcriptome which would play a pivotal role in understanding the biochemistry of the yeast under acute nitrogen stress and this study would be encouraging to initiate extensive investigations into this Papiliotrema system.
Topics: Agaricales; Fungal Proteins; Gene Expression Profiling; Gene Expression Regulation, Fungal; High-Throughput Nucleotide Sequencing; Metabolic Networks and Pathways; Microsatellite Repeats; Nitrogen; Sequence Analysis, RNA; Stress, Physiological
PubMed: 29247800
DOI: 10.1016/j.gene.2017.12.014 -
Ecotoxicology and Environmental Safety Jun 2020The ability of P. laurentii strain RY1 to remediate lead (Pb) from water was investigated in batch and column studies. The lead removal ability of non-viable biomass,...
The ability of P. laurentii strain RY1 to remediate lead (Pb) from water was investigated in batch and column studies. The lead removal ability of non-viable biomass, non-viable biomass immobilised on agar-agar (biobeads) and agar-agar at different pH was compared in batch studies. It was found that among the three, biobeads have maximum ability to remove Pb followed by biomass and agar-agar beads. Maximum and almost equal lead removal by biobeads was observed at both neutral and alkaline pH making it a novel and more applicable bioremediator as all other reported bioremediators have a single pH for optimum activity. Studies were performed to determine the optimum conditions for lead removal from aqueous solutions for biobeads. The physical and chemical characterization of the biobeads before and after Pb biosorption was done by using S.E.M. and F.T.I.R. respectively. The adsorption of Pb on biobeads obeyed the Langmuir adsorption isotherm and pseudo first order kinetics. These mean that the Pb binding sites are identical, located on the surface of the adsorbant and the rate of Pb removal from aqueous solution is directly proportional to the number of Pb binding sites on the biobeads. The thermodynamics of the biosorption process is also investigated. The binding capacity of the biobeads in batch study was found to be 52.91mg/gm which is higher in comparison to other reported yeast bioremediators. The used biobeads can be desorbed using 0.1(M) CaCl. The desorbed biobeads can be used subsequently for several cycles of lead removal making it cost-effective. Column studies were also performed for biobeads with the help of Thomas model for examining its suitability for industrial application. Maximum specific lead uptake of the biobeads when applied in the column was found to be 58.26mg/gm which being promising makes it suitable for application in industries involved in the treatment of wastewater contaminated with high amounts of lead. The high mass transfer co-efficient indicate that small sized column can be used effectively to remove high amounts of lead which makes the bioremediation process by the biobeads more economical and advantageous for industrial application. Several factors like effectiveness of the biobeads in Pbremoval at both neutral and alkaline pH, reusability, high mass transfer co-efficient, regenerability and high binding capacity makes it a novel versatile, cost-effective and high utility bioremediator.
Topics: Adsorption; Agar; Basidiomycota; Binding Sites; Biodegradation, Environmental; Biomass; Hydrogen-Ion Concentration; Kinetics; Lead; Models, Theoretical; Thermodynamics; Wastewater; Water Pollutants, Chemical; Water Purification
PubMed: 32182528
DOI: 10.1016/j.ecoenv.2020.110439 -
Scientific Reports Sep 2023The Cryptococcus genus comprises more than 100 species, of which C. neoformans and C. gattii are the leading cause of cryptococcosis. The distribution of C. gattii and...
The Cryptococcus genus comprises more than 100 species, of which C. neoformans and C. gattii are the leading cause of cryptococcosis. The distribution of C. gattii and C. neoformans species complexes has been extensively studied and widely reported globally. Other species such as Naganishia albida, Papiliotrema laurentii, and Papiliotrema flavescens have been reported as pathogenic yeasts. Since there are no reports of environmental isolation in the Boyacá region (Colombia), this study aimed to isolate and characterize Cryptococcus and Cryptococcus-like yeasts from pigeon feces, Eucalyptus, and olive trees distributed in the municipalities of Tunja and Ricaute Alto. The environmental data was recovered, and the isolations obtained were identified by microscopy, biochemical test, MALDI-TOF MS, URA5-RFLP, and sequencing of the ITS and LSU loci. For the 93 pigeon dropping samples collected in Tunja, 23 yielded to C. neoformans, 3 to N. globosa, 2 N. albida and 1 to P. laurentii. Of the 1188 samples collected from olive trees, 17 (1.43%) positive samples were identified as C. gattii species complex (4), C. neoformans species complex (2), P. laurentii (3), N. albida (2), N. globosa (5) and P. flavescens (1). Likewise, specimens of C. neoformans presented molecular type VNI and molecular type VNII; for C. gattii the molecular types found were VGIII and one VGIV by URA5-RFLP but VGIII by MALDI-TOF and sequencing of the ITS and LSU. Therefore, it can be concluded that the species of Cryptococcus, Naganishia and Papiliotrema genera, are present in the environment of Boyacá, and show a predilection for climate conditions that are typical of this region.
Topics: Animals; Colombia; Cryptococcus neoformans; Cryptococcus gattii; Cryptococcosis; Climate; Columbidae; Olea
PubMed: 37735454
DOI: 10.1038/s41598-023-41994-6 -
3 Biotech Sep 2020In this work, we isolated and selected oleaginous yeasts from rock field soils from two National Parks in Brazil ( and ) with the potential to accumulate oil from...
In this work, we isolated and selected oleaginous yeasts from rock field soils from two National Parks in Brazil ( and ) with the potential to accumulate oil from xylose, the main pentose sugar found in lignocellulosic biomass. From the 126 isolates, two were selected based on their lipid contents. They were taxonomically identified as (UFV-1 and UFV-2). Of the two, UFV-1 was selected as the best lipid producer Under unoptimized conditions, lipid production by UFV-1 was higher in glucose than in xylose. To improve its lipid production from xylose, we applied response surface methodology (RSM) with a face-centered central composite design (CCF). We evaluated the effects of agitation rate, initial cell biomass (OD), carbon/nitrogen ratio (/ ratio) and pH on lipid production. UFV-1 recorded the highest lipid content, 63.5% (w/w) of the cell dry mass, under the following conditions: / ratio = 100:1, pH value = 7.0, initial OD = 0.8 and agitation = 300 rpm. Under these optimized conditions, biomass, lipid titer and volumetric lipid productivity were 9.31 g/L, 5.90 g/L and 0.082 g/L.h, respectively. Additionally, we determined the fatty acid composition of UFV-1 as follows: C14:0 (0.5%), C16:0 (28.4-29.4%), C16:1 (0.2%), C18:0 (9.5-11%), C18:1 (58.6-60.5%), and C20:0 (0.7-0.8%). Based on this composition, the predicted properties of biodiesel showed that UFV-1 oil is suitable for use as feedstock in biodiesel production.
PubMed: 32802724
DOI: 10.1007/s13205-020-02373-4 -
PloS One 2022Neuromeningeal cryptococcosis (NMC) is a life-threatening opportunistic infection in advanced HIV disease patients (AHDP). It is caused by Cryptococcus spp. complexes...
Neuromeningeal cryptococcosis (NMC) is a life-threatening opportunistic infection in advanced HIV disease patients (AHDP). It is caused by Cryptococcus spp. complexes and mainly occurs in sub-Saharan Africa. In this study, we performed molecular characterization and antifungal susceptibility profiling of Cryptococcus isolates from AHDP in Kinshasa (DRC). Additionally, we investigated a possible association between NMC severity factors and the Cryptococcus neoformans (Cn) multilocus sequence typing (MLST) profiles. We characterized the isolates using PCR serotyping, MALDI-TOF MS, internal transcribed spacer (ITS) sequencing, and MLST. Susceptibility testing for the major antifungal drugs was performed according to the EUCAST guidelines. Parameters associated with NMC severity, such as hypoglycorrhachia (< 50 mg/dL), increased cerebral spinal fluid opening pressure (> 30 cm H2O), and poor therapeutic outcome were compared with the Cn MLST sequences type (ST). Twenty-three out of 29 Cryptococcus isolates were identified as serotype A using PCR serotyping (79.3%; 95% IC: 65.5-93.1), while six (20.7%; 95% IC: 6.9-34.5) were not serotypable. The 29 isolates were identified by ITS sequencing as follows: Cryptococcus neoformans (23/29, 79.3%), Cutaneotrichosporon curvatus (previously called Cryptococcus curvatus) (5/29, 17.2%), and Papiliotrema laurentii (Cryptococcus laurentii) (1/29, 3.5%). Using the ISHAM MLST scheme, all Cn isolates were identified as molecular type VNI. These comprised seven different STs: ST93 (n = 15), ST5 (n = 2), ST53 (n = 1), ST31 (n = 1), ST4 (n = 1), ST69 (n = 1), and one novel ST that has not yet been reported from other parts of the world and was subsequently assigned as ST659 (n = 2). Of the included strains, only Papiliotrema laurentii was resistant to amphoterin B (1/29, 3.5%), 6.8% (2/29) were resistant to 5-flucytosine (the single Papiliotrema laurentii strain and one Cryptococcus neoformans isolate), and 13.8% (4/29) to fluconazole, including two of five (40%) Cutaneotrichosporon curvatus and two of 23 (8.7%) C. neoformans strains. We found a significative association between poor therapeutic outcome and a non-ST93 sequence type of causative strains (these concerned the less common sequence types: ST53, ST31, ST5, ST4, ST659, and ST69) (87.5% versus 40%, p = 0.02). Molecular analysis of Cryptococcus spp. isolates showed a wide species diversity and genetic heterogenicity of Cn within the VNI molecular type. Furthermore, it is worrying that among included strains we found resistances to several of the commonly used antifungals.
Topics: Antifungal Agents; Basidiomycota; Cryptococcosis; Cryptococcus neoformans; Democratic Republic of the Congo; Genetic Variation; Genotype; HIV Infections; Humans; Multilocus Sequence Typing; Mycological Typing Techniques
PubMed: 35587939
DOI: 10.1371/journal.pone.0267842 -
Mycoses May 2018A study of environmental distribution revealed the occurrence of Cryptococcus neoformans and C. gattii in 9% and 3%, respectively, of 611 samples investigated. C....
A study of environmental distribution revealed the occurrence of Cryptococcus neoformans and C. gattii in 9% and 3%, respectively, of 611 samples investigated. C. neoformans showed the highest isolation frequency from tree trunk hollows in Delhi (31%), whereas C. gattii occurred in 12% of the samples in Delhi and 5% in Rajasthan. In addition, Cryptococcus laurentii (=Papiliotrema laurentii), C. rajasthanensis (=Papiliotrema rajasthanensis), C. podzolicus (=Saitozyma podzolica) and C. flavescens (=Papiliotrema flavescens) occurred in 0.5% each. The recovery of C. flavescens and C. podzolicus was new findings for India. One more noteworthy finding was isolation of a new yeast, recently classified as Saitozyma cassiae sp. Novo. The previous strain of this yeast came from tree bark debris in South India. Our isolates came from decayed wood inside a trunk hollow of an Acacia tree in, Bharatpur Bird Sanctuary, Rajasthan. The isolations of novel strains of Cutaneotrichosporon moniliiforme from decayed wood of a Pinus tree was another significant finding. Phenotypically, they differed from T. moniliforme by being encapsulated cells, had melanin-like pigment production and were unable to assimilate d-manitol and d-melezitose. AFLP analysis showed a distinctive banding profile vis-a-vis the reference strains of T. moniliiforme and Cryptotrichosporon anacardii.
Topics: Amplified Fragment Length Polymorphism Analysis; Animals; Birds; Cryptococcosis; Cryptococcus; Cryptococcus gattii; Cryptococcus neoformans; Environmental Microbiology; Feces; Genes, Mating Type, Fungal; Humans; India; Phylogeny; Pinus; Plant Bark; Serogroup; Soil Microbiology; Trees; Wood; Yeasts
PubMed: 29280202
DOI: 10.1111/myc.12741