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Metabolites Jun 2023The two main species, sessile oak ( Liebl.) and pedunculate oak ( L.), predominant in French forests, are mainly used for aging wines and spirits; however, the potential...
The two main species, sessile oak ( Liebl.) and pedunculate oak ( L.), predominant in French forests, are mainly used for aging wines and spirits; however, the potential of oak wood extract as a source of natural antioxidants, due to its high polyphenol content, could be more widely exploited. This study focuses on three oak species, the two that are well-known, namely, sessile and pedunculate oak, and a third that has seldom been described and valorized, namely, pubescent oak (). Water extracts of these three species were fractionated by semi-preparative HPLC. The antioxidant activities of crude extracts and fractions were measured by colorimetric and enzymatic tests. The anti-elastase and anti-collagenase activities of the extracts and their fractions were also evaluated. In parallel, samples were analyzed by UHPLC-HRMS to correlate the activity with the molecular composition using molecular networks. The results obtained for the total extract of the three species were compared to determine if the activity depended on the species. The results within the same species were also compared to highlight which fraction and, therefore, which molecular family was involved in the activity of the total extract. The various antioxidant tests showed good activity of the total extract for the three species of oak and a very good anti-collagenase activity. The antioxidant activity of oak extract has already been proven in the literature and this is correlated with its richness in polyphenols. This study shows that each molecular family of the extract contributes to the activities of the total extract. Oak extract can be used to neutralize the ROS produced during oxidative stress and to prevent the degradation of collagen and elastase during skin aging. Its complementary properties make oak extract a valuable ingredient to act against skin aging.
PubMed: 37512511
DOI: 10.3390/metabo13070804 -
Scientific Reports Jan 2022Macrobrachium australiense, is one of Australia's most widespread freshwater invertebrates. Although a significant amount of research has been conducted to understand...
Macrobrachium australiense, is one of Australia's most widespread freshwater invertebrates. Although a significant amount of research has been conducted to understand the diversity of crustacean species in Australia, there has been considerably less effort focused on their Temnocephalidae symbionts. The present study aims to identify Temnocephalidae species found in M. australiense, along with determining their impacts on the fitness of their hosts. A total of 54 M. australiense (common Australian river prawn) were examined for evidence of infection with Temnocephalidae species, of which 96.3% showed at least one sign of infection with Temnocephalidae. Due to damage and immaturity of the worms collected from, they have been referred to as Temnocephalidae sp. based on the presence of tentacles on the anterior margin of the body, and pedunculate sucker located dorsally on the ventral surface. Possible mechanical damage to gill lamellae resulting from either egg deposition or autolysis is evident. In the phylogenetic tree built based on sequences of the 28S rRNA gene, specimens in the present study grouped separately from other Temnocephalidae species reported from Australia.
Topics: Animals; Australia; Fresh Water; Gills; Host-Parasite Interactions; Palaemonidae; Phylogeny; Platyhelminths; RNA, Ribosomal, 28S; Symbiosis
PubMed: 35082314
DOI: 10.1038/s41598-022-05123-z -
The New Phytologist May 2020Exotic pathogens cause severe damage in natural populations in the absence of coevolutionary dynamics with their hosts. However, some resistance to such pathogens may...
Exotic pathogens cause severe damage in natural populations in the absence of coevolutionary dynamics with their hosts. However, some resistance to such pathogens may occur in naive populations. The objective of this study was to investigate the genetics of this so-called 'exapted' resistance to two pathogens of Asian origin (Erysiphe alphitoides and Phytophthora cinnamomi) in European oak. Host-pathogen compatibility was assessed by recording infection success and pathogen growth in a full-sib family of Quercus robur under controlled and natural conditions. Two high-resolution genetic maps anchored on the reference genome were used to study the genetic architecture of resistance and to identify positional candidate genes. Two genomic regions, each containing six strong and stable quantitative trait loci (QTLs) accounting for 12-19% of the phenotypic variation, were mainly associated with E. alphitoides infection. Candidate genes, especially genes encoding receptor-like-kinases and galactinol synthases, were identified in these regions. The three QTLs associated with P. cinnamomi infection did not colocate with QTLs found for E. alphitoides. These findings provide evidence that exapted resistance to E. alphitoides and P. cinnamomi is present in Q. robur and suggest that the underlying molecular mechanisms involve genes encoding proteins with extracellular signaling functions.
Topics: Ascomycota; Disease Resistance; Phytophthora; Plant Diseases; Quantitative Trait Loci; Quercus
PubMed: 31711257
DOI: 10.1111/nph.16319 -
Molecules (Basel, Switzerland) Apr 2024There are several highly damaging species pathogenic to forest trees, many of which have been spread beyond their native range by the international trade of live plants...
There are several highly damaging species pathogenic to forest trees, many of which have been spread beyond their native range by the international trade of live plants and infested materials. Such introductions can be reduced through the development of better tools capable of the early, rapid, and high-throughput detection of contaminated plants. This study utilized a volatilomics approach (solid-phase microextraction coupled to gas chromatography-mass spectrometry) to differentiate between several species in culture and discriminate between healthy and -inoculated European beech and pedunculate oak trees. We tentatively identified 14 compounds that could differentiate eight species from each other in vitro. All of the species examined, except , uniquely produced at least one compound not observed in the other species; however, most detected compounds were shared between multiple species. had the most unique compounds and was the least similar of all the species examined. The inoculated seedlings had qualitatively different volatile profiles and could be distinguished from the healthy controls by the presence of isokaurene, anisole, and a mix of three unknown compounds. This study supports the notion that volatiles are suitable for screening plant material, detecting tree pathogens, and differentiating between healthy and diseased material.
Topics: Volatile Organic Compounds; Phytophthora; Gas Chromatography-Mass Spectrometry; Plant Diseases; Solid Phase Microextraction; Quercus; Fagus
PubMed: 38675569
DOI: 10.3390/molecules29081749 -
The Science of the Total Environment Dec 2021Associations of pedunculate oak (Quercus robur L.) radial growth with satellite-based soil moisture (SM) during the intensive tree growth period over a 30-year time span...
Different tree-ring width sensitivities to satellite-based soil moisture from dry, moderate and wet pedunculate oak (Quercus robur L.) stands across a southeastern distribution margin.
Associations of pedunculate oak (Quercus robur L.) radial growth with satellite-based soil moisture (SM) during the intensive tree growth period over a 30-year time span (1980-2010) were analyzed. This study included tree-ring width (TRW) chronologies from 22 stands located in four southeastern (SE) European countries (Slovenia, Croatia, Serbia and Bulgaria), which were grouped into three wetness groups (WGs): dry (<650 mm), moderate (650-750 mm), and wet (>750 mm), following the annual sum of precipitation. High correlation strengths during the intensive growth period-late spring and early summer months (April to June) was noted, which was opposite to the trend in late summer months. Variations in detrended TRW (TRWi) sensitivity to SM were also observed among the WGs. Specifically, the TRWi chronologies from the dry and wet WGs provided a greater number of significant correlations (p < 0.01) than trees from the moderate WG did. In wetter stands, TRWi correlated more negatively in the wettest (spring) months, while the correlation was weaker in summer months; these trends were opposite to those of trees growing in drier conditions that had the strongest responses to SM. A generalized additive mixed model (GAMM) based on 38 variables indicated that the fit for SM and radial growth was as strong as the fits for other traditionally measured parameters (temperature, precipitation, and river water level) and calculated drought indices (standardized precipitation index and the Ellenberg index) and TRW. Additionally, radial growth chronologies from drier sites had stronger fits with surrounding environmental factors. In conclusion, our findings suggest that SM can potentially be used as a reliable remote sensing indicator of the soil wetness in oak forests, which affects tree productivity and radial growth patterns and provides a new opportunity in dendrochronology research on larger scales.
Topics: Climate; Droughts; Quercus; Soil; Trees
PubMed: 34392225
DOI: 10.1016/j.scitotenv.2021.149536 -
Metabolites Oct 2021Two species of oak are dominant in French forests: pedunculate oak () and sessile oak (.). Their differentiation is not straightforward but is essential to better...
Two species of oak are dominant in French forests: pedunculate oak () and sessile oak (.). Their differentiation is not straightforward but is essential to better understand their respective molecular content in order to better valorize them. Thus, to improve oak species identification, an untargeted UHPLC-HRMS/MS method associated with a two-step data treatment was developed to analyze a wide range of specialized metabolites enabling the comparison of both species of oak extracts. Pooled extracts from sessile and pedunculate oaks, composed of extracts from several trees of pure species from various origins, were compared using first the Venn diagram, as a quick way to get an initial idea of how close the extracts are, and then using a molecular network to visualize, on the one hand, the ions shared between the two species and, on the other hand, the compounds specific to one species. The molecular network showed that the two species shared common clusters mainly representative of tannins derivatives and that each species has specific molecules with similar fragmentation patterns, associated in specific clusters. This methodology was then applied to compare these two pooled extracts to unknown individuals in order to determine the species. The Venn diagram allowed for the quick presumption of the species of the individual and then the species could be assigned more precisely with the molecular network, at the level of specific clusters. This method, developed for the first time, has several interests. First, it makes it possible to discriminate the species and to correctly assign the species of unknown samples. Moreover, it gave an overview of the metabolite composition of each sample to better target oak tree utilization and valorization.
PubMed: 34677399
DOI: 10.3390/metabo11100684 -
Plant Physiology Nov 2022Drought and waterlogging impede tree growth and may even lead to tree death. Oaks, an emblematic group of tree species, have evolved a range of adaptations to cope with...
Drought and waterlogging impede tree growth and may even lead to tree death. Oaks, an emblematic group of tree species, have evolved a range of adaptations to cope with these constraints. The two most widely distributed European species, pedunculate (PO; Quercus robur L.) and sessile oak (SO; Quercus petraea Matt. Lieb), have overlapping ranges, but their respective distribution are highly constrained by local soil conditions. These contrasting ecological preferences between two closely related and frequently hybridizing species constitute a powerful model to explore the functional bases of the adaptive responses in oak. We exposed oak seedlings to waterlogging and drought, conditions typically encountered by the two species in their respective habitats, and studied changes in gene expression in roots using RNA-seq. We identified genes that change in expression between treatments differentially depending on species. These "species × environment"-responsive genes revealed adaptive molecular strategies involving adventitious and lateral root formation, aerenchyma formation in PO, and osmoregulation and ABA regulation in SO. With this experimental design, we also identified genes with different expression between species independently of water conditions imposed. Surprisingly, this category included genes with functions consistent with a role in intrinsic reproductive barriers. Finally, we compared our findings with those for a genome scan of species divergence and found that the expressional candidate genes included numerous highly differentiated genetic markers between the two species. By combining transcriptomic analysis, gene annotation, pathway analyses, as well as genome scan for genetic differentiation among species, we were able to highlight loci likely involved in adaptation of the two species to their respective ecological niches.
Topics: Quercus; Water; Soil; Trees; Gene Expression
PubMed: 36066428
DOI: 10.1093/plphys/kiac420 -
PloS One 2021Natural succession of vegetation on abandoned farmland provides opportunities for passive rewilding to re-establish native woodlands, but in Western Europe the patterns...
Natural succession of vegetation on abandoned farmland provides opportunities for passive rewilding to re-establish native woodlands, but in Western Europe the patterns and outcomes of vegetation colonisation are poorly known. We combine time series of field surveys and remote sensing (lidar and photogrammetry) to study woodland development on two farmland fields in England over 24 and 59 years respectively: the New Wilderness (2.1 ha) abandoned in 1996, and the Old Wilderness (3.9 ha) abandoned in 1961, both adjacent to ancient woodland. Woody vegetation colonisation of the New Wilderness was rapid, with 86% vegetation cover averaging 2.9 m tall after 23 years post-abandonment. The Old Wilderness had 100% woody cover averaging 13.1 m tall after 53 years, with an overstorey tree-canopy (≥ 8 m tall) covering 91%. By this stage, the structural characteristics of the Old Wilderness were approaching those of neighbouring ancient woodlands. The woody species composition of both Wildernesses differed from ancient woodland, being dominated by animal-dispersed pedunculate oak Quercus robur and berry-bearing shrubs. Tree colonisation was spatially clustered, with wind-dispersed common ash Fraxinus excelsior mostly occurring near seed sources in adjacent woodland and hedgerows, and clusters of oaks probably resulting from acorn hoarding by birds and rodents. After 24 years the density of live trees in the New Wilderness was 132/ha (57% oak), with 390/ha (52% oak) in the Old Wilderness after 59 years; deadwood accounted for 8% of tree stems in the former and 14% in the latter. Passive rewilding of these 'Wilderness' sites shows that closed-canopy woodland readily re-established on abandoned farmland close to existing woodland, it was resilient to the presence of herbivores and variable weather, and approached the height structure of older woods within approximately 50 years. This study provides valuable long-term reference data in temperate Europe, helping to inform predictions of the potential outcomes of widespread abandonment of agricultural land in this region.
Topics: Conservation of Natural Resources; Ecosystem; Forests; Trees
PubMed: 34133452
DOI: 10.1371/journal.pone.0252466 -
International Journal of Molecular... Apr 2020Adhesive secretion has a fundamental role in barnacles' survival, keeping them in an adequate position on the substrate under a variety of hydrologic regimes. It arouses...
Adhesive secretion has a fundamental role in barnacles' survival, keeping them in an adequate position on the substrate under a variety of hydrologic regimes. It arouses special interest for industrial applications, such as antifouling strategies, underwater industrial and surgical glues, and dental composites. This study was focused on the goose barnacle adhesion system, a species that lives in the Eastern Atlantic strongly exposed intertidal rocky shores and cliffs. The protein composition of cement multicomplex and cement gland was quantitatively studied using a label-free LC-MS high-throughput proteomic analysis, searched against a custom transcriptome-derived database. Overall, 11,755 peptide sequences were identified in the gland while 2880 peptide sequences were detected in the cement, clustered in 1616 and 1568 protein groups, respectively. The gland proteome was dominated by proteins of the muscle, cytoskeleton, and some uncharacterized proteins, while the cement was, for the first time, reported to be composed by nearly 50% of proteins that are not canonical cement proteins, mainly unannotated proteins, chemical cues, and protease inhibitors, among others. Bulk adhesive proteins accounted for one-third of the cement proteome, with CP52k being the most abundant. Some unannotated proteins highly expressed in the proteomes, as well as at the transcriptomic level, showed similar physicochemical properties to the known surface-coupling barnacle adhesive proteins while the function of the others remains to be discovered. New quantitative and qualitative clues are provided to understand the diversity and function of proteins in the cement of stalked barnacles, contributing to the whole adhesion model in Cirripedia.
Topics: Animals; Cell Adhesion Molecules; Exocrine Glands; Proteome; Thoracica
PubMed: 32260514
DOI: 10.3390/ijms21072524 -
Tree Physiology Jul 2021Research on wood phenology has mainly focused on reactivation of the cambium in spring. In this study we investigated if summer drought advances cessation of wood...
Research on wood phenology has mainly focused on reactivation of the cambium in spring. In this study we investigated if summer drought advances cessation of wood formation and if it has any influence on wood structure in late successional forest trees of the temperate zone. The end of xylogenesis was monitored between August and November in stands of European beech and pedunculate oak in Belgium for two consecutive years, 2017 and 2018, with the latter year having experienced an exceptional summer drought. Wood formation in oak was affected by the drought, with oak trees ceasing cambial activity and wood maturation about 3 weeks earlier in 2018 compared with 2017. Beech ceased wood formation before oak, but its wood phenology did not differ between years. Furthermore, between the 2 years, no significant difference was found in ring width, percentage of mature fibers in the late season, vessel size and density. In 2018, beech did show thinner fiber walls, whereas oak showed thicker walls. In this paper, we showed that summer drought can have an important impact on late season wood phenology xylem development. This will help to better understand forest ecosystems and improve forest models.
Topics: Droughts; Ecosystem; Seasons; Trees; Wood; Xylem
PubMed: 33616191
DOI: 10.1093/treephys/tpaa175