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Archives of Microbiology Dec 2020Planococcus halotolerans, recently described as a novel species with SCU63 as the type strain, is capable of thriving in up to 15% NaCl and temperatures as low as...
Planococcus halotolerans, recently described as a novel species with SCU63 as the type strain, is capable of thriving in up to 15% NaCl and temperatures as low as 0 °C. To better understand its adaptation strategies at the genomic level, strain SCU63 was subjected to whole-genome sequencing and data mining. The high-quality assembly yielded 17 scaffolds with a genome size of 3,622,698 bp. Its genome harbors 3683 protein-coding sequences and 127 RNA genes, as well as three biosynthetic gene clusters and 25 genomic islands. The phylogenomic tree provided compelling insights into the evolutionary relationships of Planococcus. Comparative genomic analysis revealed key similarities and differences in the functional gene categories among Planococcus species. Strain SCU63 was shown to have diverse stress response systems for high salt and cold habitats. Further comparison with three related species showed the presence of numerous unique gene clusters in the SCU63 genome. The strain might serve as a good model for using extremozymes in various biotechnological processes.
Topics: Acclimatization; Cold Temperature; Genomics; Multigene Family; Phylogeny; Planococcaceae; Planococcus Bacteria; Salt Tolerance; Sequence Analysis, DNA; Whole Genome Sequencing
PubMed: 32681430
DOI: 10.1007/s00203-020-01979-9 -
Marine Drugs Mar 2021With the widespread occurrence of aquaculture diseases and the broad application of antibiotics, drug-resistant pathogens have increasingly affected aquatic animals'...
With the widespread occurrence of aquaculture diseases and the broad application of antibiotics, drug-resistant pathogens have increasingly affected aquatic animals' health. Marine probiotics, which live under high pressure in a saltwater environment, show high potential as a substitute for antibiotics in the field of aquatic disease control. In this study, twenty strains of non-hemolytic bacteria were isolated from the intestine of wild oysters and perch, and a model of infected by was established. Based on the model, ML1206, which showed a 99% similarity of 16S rRNA sequence to , was selected as a potential marine probiotic, with strong antibacterial capabilities and great acid and bile salt tolerance, to protect from being damaged by . Combined with plate counting and transmission electron microscopy, it was found that strain ML1206 could significantly inhibit colonization in the intestinal tract of . Acute oral toxicity tests in mice showed that ML1206 was safe and non-toxic. The real-time qPCR results showed a higher expression level of genes related to the antibacterial peptide () and detoxification (, , and ) in the group of protected by ML1206 compared to the control group. It is speculated that ML1206, as a potential probiotic, may inhibit the infection caused by through stimulating to secrete antibacterial effectors and detoxification proteins. This paper provides a new direction for screening marine probiotics and an experimental basis to support the potential application of ML1206 as a marine probiotic in aquaculture.
Topics: Animals; Aquaculture; Caenorhabditis elegans; Female; Intestines; Male; Mice; Mice, Inbred ICR; Ostreidae; Planococcaceae; Probiotics; RNA, Ribosomal, 16S; Survival; Vibrio; Vibrio Infections
PubMed: 33809116
DOI: 10.3390/md19030150 -
Journal of Microbiology and... May 2015To enrich the genetic resource of microbial xylanases with high activity and stability under alkaline conditions, a xylanase gene (xynSL4) was cloned from Planococcus...
To enrich the genetic resource of microbial xylanases with high activity and stability under alkaline conditions, a xylanase gene (xynSL4) was cloned from Planococcus sp. SL4, an alkaline xylanase-producing strain isolated from the sediment of soda lake Dabusu. Deduced XynSL4 consists of a putative signal peptide of 29 residues and a catalytic domain (30-380 residues) of glycosyl hydrolase family 10, and shares the highest identity of 77% with a hypothetical protein from Planomicrobium glaciei CHR43. Phylogenetic analysis indicated that deduced XynSL4 is closely related with thermophilic and alkaline xylanases from Geobacillus and Bacillus species. The gene xynSL4 was expressed heterologously in Escherichia coli and the recombinant enzyme showed some superior properties. Purified recombinant XynSL4 (rXynSL4) was highly active and stable over the neutral and alkaline pH range from 6 to 11, with maximum activity at pH 7 and more than 60% activity at pH 11. It had an apparent temperature optimum of 70°C and retained stable at this temperature in the presence of substrate. rXynSL4 was highly halotolerant, retaining more than 55% activity with 0.25-3.0 M NaCl and was stable at the concentration of NaCl up to 4M. The enzyme activity was significantly enhanced by β-mercaptoethanol and Ca(2+) but strongly inhibited by heavy-metal ions and SDS. This thermophilic and alkaline- and salt-tolerant enzyme has great potential for basic research and industrial applications.
Topics: Amino Acid Sequence; Bacterial Proteins; China; Cloning, Molecular; Endo-1,4-beta Xylanases; Enzyme Stability; Geologic Sediments; Lakes; Molecular Sequence Data; Planococcus Bacteria; Sequence Alignment
PubMed: 25381738
DOI: 10.4014/jmb.1408.08062 -
The Science of the Total Environment Aug 2021Anthropogenic nutrients released into water induce eutrophication and threaten aquatic life and human health. In this study, an Fe anode coagulation cell with...
Anthropogenic nutrients released into water induce eutrophication and threaten aquatic life and human health. In this study, an Fe anode coagulation cell with nitrification and denitrification biocathodes was constructed for power generation and algae and nutrient removal. The nitrification and denitrification biocathodes achieved maximum power densities of 6.0 and 6.6 W/m, respectively. The algae (99.2 ± 0.5%), phosphate (97.4 ± 0.6%), and ammonia (23.1 ± 0.2%) were removed by a spontaneous electrocoagulation process in the anode chamber. In the nitrification biocathode chamber, 95.3 ± 1.4% of the ammonia was oxidized within 6 h, and 88.2 ± 2.5% of the nitrate was removed in 10 h in the denitrification biocathode chamber. The microbial community analysis revealed that ammonia removal was attributed to nitrifying bacteria, including Acinetobacter sp., Phycisphaera sp., and Nitrosomonas sp., and the dominant denitrifying bacteria in the denitrifying biocathode chamber were Planococcus sp., Exiguobacterium sp., and Lysinibacillus sp. In this study, the combination of Fe anodes and biocathodes is shown to afford an efficient method for the simultaneous algae and nutrient removal and power generation.
Topics: Bioelectric Energy Sources; Bioreactors; Denitrification; Electricity; Humans; Iron; Nitrification; Nitrogen; Wastewater; Water Purification
PubMed: 33838382
DOI: 10.1016/j.scitotenv.2021.146436 -
The ISME Journal Mar 2017Mealybugs (Insecta: Hemiptera: Pseudococcidae) maintain obligatory relationships with bacterial symbionts, which provide essential nutrients to their insect hosts. Most...
Mealybugs (Insecta: Hemiptera: Pseudococcidae) maintain obligatory relationships with bacterial symbionts, which provide essential nutrients to their insect hosts. Most pseudococcinae mealybugs harbor a unique symbiosis setup with enlarged betaproteobacterial symbionts ('Candidatus Tremblaya princeps'), which themselves contain gammaproteobacterial symbionts. Here we investigated the symbiosis of the manna mealybug, Trabutina mannipara, using a metagenomic approach. Phylogenetic analyses revealed that the intrabacterial symbiont of T. mannipara represents a novel lineage within the Gammaproteobacteria, for which we propose the tentative name 'Candidatus Trabutinella endobia'. Combining our results with previous data available for the nested symbiosis of the citrus mealybug Planococcus citri, we show that synthesis of essential amino acids and vitamins and translation-related functions partition between the symbiotic partners in a highly similar manner in the two systems, despite the distinct evolutionary origin of the intrabacterial symbionts. Bacterial genes found in both mealybug genomes and complementing missing functions in both symbioses were likely integrated in ancestral mealybugs before T. mannipara and P. citri diversified. The high level of correspondence between the two mealybug systems and their highly intertwined metabolic pathways are unprecedented. Our work contributes to a better understanding of the only known intracellular symbiosis between two bacteria and suggests that the evolution of this unique symbiosis included the replacement of intrabacterial symbionts in ancestral mealybugs.
Topics: Animals; Bacteria; Betaproteobacteria; Biological Evolution; Gammaproteobacteria; Hemiptera; Symbiosis
PubMed: 27983719
DOI: 10.1038/ismej.2016.148 -
Journal of Environmental Health Science... Dec 2020The aim of the present work was to assess the electrogenic activity of bacteria from hydrothermal vent sediments achieved under sulfate reducing (SR) conditions in a...
PURPOSE
The aim of the present work was to assess the electrogenic activity of bacteria from hydrothermal vent sediments achieved under sulfate reducing (SR) conditions in a microbial fuel cell design with acetate, propionate and butyrate as electron donors.
METHODS
Two different mixtures of volatile fatty acids (VFA) were evaluated as the carbon source at two chemical oxygen demand (COD) proportions. The mixtures of VFA used were: acetate, propionate and butyrate COD: 3:0.5:0.5 (stage 1) and acetate - butyrate COD: 3.5:0.5 (stage 2). Periodical analysis of sulfate (SO ), sulfide (HS) and COD were conducted to assess sulfate reduction (SR) and COD removal along with measurements of voltage and current to assess the global performance of the consortium in the system.
RESULTS
Percentage of SR was of 97.5 ± 0.7 and 74.3 ± 1.5% for stage 1 and 2, respectively. The % COD removal was of 91 ± 2.1 and 75.3 ± 9.6 for stage 1 and 2, respectively. Although SR and COD removal were higher at stage 1, in regards of energy, stage 2 presented higher current and power densities and Coulombic efficiency as follows: 741.7 ± 30.5 μA/m, 376 ± 34.4 μW/m and 5 ± 2.7%, whereas for stage 1 these values were: 419 ± 71 μA/m, 52.7 ± 18 μW/m and 0.02%, respectively. A metagenomic analysis - stage 2 - in the anodic chamber, demonstrated that SR was due to (), and and the electrogenic microorganisms were , , , , and families and .
CONCLUSIONS
It was demonstrated that microorganisms prevenient from hydrothermal vent sediments adapted to a microbial fuel cell system are able to generate electricity coupled to 74.3 ± 1.5 and 75.3 ± 9.6% of SR and COD removal respectively, with a mixture of acetate - butyrate.
PubMed: 33312634
DOI: 10.1007/s40201-020-00537-1 -
Biotechnology Reports (Amsterdam,... Mar 2019Carotenoids are isoprenoid pigments used by pharmaceutical, cosmetic, food and feed industry as antioxidants and colorants. Although traditional sources of carotenoids...
Carotenoids are isoprenoid pigments used by pharmaceutical, cosmetic, food and feed industry as antioxidants and colorants. Although traditional sources of carotenoids are fruits, vegetables and chemical synthesis, prospecting for alternative sinks of common and/or unusual carotenoids is important for the development of natural carotenoid industry. In this work, 30 pigmented bacterial strains from Fildes Peninsula in King George Island, Antarctica, were isolated and identified by 16S rRNA gene sequencing and classified in three phyla, Bacteroidetes, Firmicutes and Actinobacteria. After cells extraction, ten different carotenoids were identified based on the chromatographic and spectroscopic characteristic obtained by HPLC-PDA and HPLC-PDA-APCI-MS analyses. Strains assigned to Bacteroidetes affiliated to and genera, presented a pigment profile composed of zeaxanthin, β-cryptoxanthin and β-carotene. Firmicutes strains of genus produced a C50 carotenoid, identified as C.p. 450 glucoside. Actinobacteria isolates were mainly assigned to genus, and few to and genera. strains produced C50 carotenoids such as decaprenoxanthin and its glucosylated derivatives, as well as some C40 carotenoids such as lycopene which is used as synthesis precursors of the C50 carotenoids. and genera produced C.p. 450 free form and its glucosylated derivatives. Although most isolates produce carotenoids similar in diversity and quantity than those already reported in the literature, novel sources for C50 carotenoids results from this work. According to their carotenoid content, all isolates could be promising candidates for carotenoids production.
PubMed: 30705834
DOI: 10.1016/j.btre.2019.e00306 -
Journal of Biotechnology Jun 2017The type strain Planococcus donghaensis JH1 is a psychrotolerant and halotolerant bacterium with starch-degrading ability. Here, we determine the carbon utilization...
The type strain Planococcus donghaensis JH1 is a psychrotolerant and halotolerant bacterium with starch-degrading ability. Here, we determine the carbon utilization profile of P. donghaensis JH1 and report the first complete genome of the strain. This study revealed the strain's ability to utilize pectin and d-galacturonic acid, and identified genes responsible for degradation of the polysaccharides. The genomic information provided may serve as a fundamental resource for full exploration of the biotechnological potential of P. donghaensis JH1.
Topics: DNA, Bacterial; Genome, Bacterial; Hexuronic Acids; Pectins; Planococcus Bacteria; Sequence Analysis, DNA
PubMed: 28483443
DOI: 10.1016/j.jbiotec.2017.05.005 -
3 Biotech Jun 2017Microbial communities in hot springs at high elevations have been extensively studied worldwide. In this sense, the Indian Himalaya regions is valuable ecosystems for...
Microbial communities in hot springs at high elevations have been extensively studied worldwide. In this sense, the Indian Himalaya regions is valuable ecosystems for providing both the extreme 'cold' and 'hot' sites for exploring microbial diversity. In the present study, a total of 140 thermophilic bacteria were isolated from 12 samples collected from Manikaran and Yumthang hot springs of Indian Himalayas. The bacterial isolates were studied for phylogenetic profiling, growth properties at varying conditions and potential sources of extracellular thermostable hydrolytic enzymes such as protease, amylase, xylanase and cellulase. Based on production of extracellular hydrolases, 51 isolates from Manikaran (28) and Yumthang thermal springs (23) were selected and identified using 16S rRNA gene sequencing which included 37 distinct species of 14 different genera namely Anoxybacillus, Bacillus, Brevibacillus, Brevundimonas, Burkholderia, Geobacillus, Paenibacillus, Planococcus, Pseudomonas, Rhodanobacter, Thermoactinomyces, Thermobacillus, Thermonema and Thiobacillus. Out of 51 hydrolase producing bacteria, 24 isolates showed stability at wide range of temperature and pH treatments. In present investigation, three thermotolerant bacteria namely, Thermobacillus sp NBM6, Paenibacillus ehimensis NBM24 and Paenibacillus popilliae NBM68 were found to produced cellulase-free xylanase. These potential extracellular thermostable hydrolytic enzymes producing thermophilic bacteria have a great commercial prospect in various industrial, medical and agriculture applications.
PubMed: 28567630
DOI: 10.1007/s13205-017-0762-1 -
Environmental Microbiology Nov 2017The eurypsychrophilic bacterium Planococcus halocryophilus is capable of growth down to -15°C, making it ideal for studying adaptations to subzero growth. To increase...
The eurypsychrophilic bacterium Planococcus halocryophilus is capable of growth down to -15°C, making it ideal for studying adaptations to subzero growth. To increase our understanding of the mechanisms and pathways important for subzero growth, we performed proteomics on P. halocryophilus grown at 23°C, 23°C with 12% w/v NaCl and -10°C with 12% w/v NaCl. Many proteins with increased abundances at -10°C versus 23°C also increased at 23C-salt versus 23°C, indicating a closely tied relationship between salt and cold stress adaptation. Processes which displayed the largest changes in protein abundance were peptidoglycan and fatty acid (FA) synthesis, translation processes, methylglyoxal metabolism, DNA repair and recombination, and protein and nucleotide turnover. We identified intriguing targets for further research at -10°C, including PlsX and KASII (FA metabolism), DD-transpeptidase and MurB (peptidoglycan synthesis), glyoxalase family proteins (reactive electrophile response) and ribosome modifying enzymes (translation turnover). PemK/MazF may have a crucial role in translational reprogramming under cold conditions. At -10°C P. halocryophilus induces stress responses, uses resources efficiently, and carefully controls its growth and metabolism to maximize subzero survival. The present study identifies several mechanisms involved in subzero growth and enhances our understanding of cold adaptation.
Topics: Acclimatization; Bacterial Proteins; Cold Temperature; DNA Repair; Planococcus Bacteria; Proteomics
PubMed: 28834033
DOI: 10.1111/1462-2920.13893