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Environmental Microbiology Jan 2023
Topics: Population Density
PubMed: 36310117
DOI: 10.1111/1462-2920.16267 -
Journal of Mathematical Biology Apr 2022We derive an alternative expression for a delayed logistic equation in which the rate of change in the population involves a growth rate that depends on the population...
We derive an alternative expression for a delayed logistic equation in which the rate of change in the population involves a growth rate that depends on the population density during an earlier time period. In our formulation, the delay in the growth term is consistent with the rate of instantaneous decline in the population given by the model. Our formulation is a modification of Arino et al. (J Theor Biol 241(1):109-119, 2006) by taking the intraspecific competition between the adults and juveniles into account. We provide a complete global analysis showing that no sustained oscillations are possible. A threshold giving the interface between extinction and survival is determined in terms of the parameters in the model. The theory of chain transitive sets and the comparison theorem for cooperative delay differential equations are used to determine the global dynamics of the model. We extend our delayed logistic equation to a system modeling the competition between two species. For the competition model, we provide results on local stability, bifurcation diagrams, and adaptive dynamics. Assuming that the species with shorter delay produces fewer offspring at a time than the species with longer delay, we show that there is a critical value, [Formula: see text], such that the evolutionary trend is for the delay to approach [Formula: see text].
Topics: Ecosystem; Models, Biological; Population Density; Population Dynamics; Population Growth
PubMed: 35438310
DOI: 10.1007/s00285-022-01741-3 -
The Journal of Animal Ecology Jan 2018Insular species are predicted to broaden their niches, in response to having fewer competitors. They can thus exploit a greater proportion of the resource spectrum. In...
Insular species are predicted to broaden their niches, in response to having fewer competitors. They can thus exploit a greater proportion of the resource spectrum. In turn, broader niches are hypothesized to facilitate (or be a consequence of) increased population densities. We tested whether insular lizards have broader dietary niches than mainland species, how it relates to competitor and predator richness, and the nature of the relationship between population density and dietary niche breadth. We collected population density and dietary niche breadth data for 36 insular and 59 mainland lizard species, and estimated competitor and predator richness at the localities where diet data were collected. We estimated dietary niche shift by comparing island species to their mainland relatives. We controlled for phylogenetic relatedness, body mass and the size of the plots over which densities were estimated. We found that island and mainland species had similar niche breadths. Dietary niche breadth was unrelated to competitor and predator richness, on both islands and the mainland. Population density was unrelated to dietary niche breadth across island and mainland populations. Our results indicate that dietary generalism is not an effective way of increasing population density nor is it result of lower competitive pressure. A lower variety of resources on islands may prevent insular animals from increasing their niche breadths even in the face of few competitors.
Topics: Animals; Diet; Geography; Islands; Lizards; Phylogeny; Population Density; Predatory Behavior
PubMed: 28944457
DOI: 10.1111/1365-2656.12762 -
Ecology Oct 2022Group living in species can have complex consequences for individuals, populations, and ecosystems. Therefore, estimating group density and size is often essential for...
Group living in species can have complex consequences for individuals, populations, and ecosystems. Therefore, estimating group density and size is often essential for understanding population dynamics, interspecific interactions, and conservation needs of group-living species. Spatial capture-recapture (SCR) has been used to model both individual and group density in group-living species, but modeling either individual-level or group-level detection results in different biases due to common characteristics of group-living species, such as highly cohesive movement or variation in group size. Furthermore, no SCR method currently estimates group density, individual density, and group size jointly. Using clustered point processes, we developed a cluster SCR model to estimate group density, individual density, and group size. We compared the model to standard SCR models using both a simulation study and a data set of detections of African wild dogs (Lycaon pictus), a group-living carnivore, on camera traps in northern Botswana. We then tested the model's performance under various scenarios of group movement in a separate simulation study. We found that the cluster SCR model outperformed a standard group-level SCR model when fitted to data generated with varying group sizes, and mostly recovered previous estimates of wild dog group density, individual density, and group size. We also found that the cluster SCR model performs better as individuals' movements become more correlated with their groups' movements. The cluster SCR model offers opportunities to investigate ecological hypotheses relating group size to population dynamics while accounting for cohesive movement behaviors in group-living species.
Topics: Computer Simulation; Ecosystem; Population Density; Population Dynamics
PubMed: 34714927
DOI: 10.1002/ecy.3576 -
International Journal of Environmental... Nov 2021Urban population density distribution contributes towards a deeper understanding of peoples' activities patterns and urban vibrancy. The associations between the...
Urban population density distribution contributes towards a deeper understanding of peoples' activities patterns and urban vibrancy. The associations between the distribution of urban population density and land use are crucial to improve urban spatial structure. Despite numerous studies on population density distribution and land use, the significance of spatial dependence has attained less attention. Based on the Baidu heat map data and points of interests data in the main urban zone of Guangzhou, China, the current paper first investigated the spatial evolution and temporal distribution characteristics of urban population density and examined the spatial spillover influence of land use on it through spatial correlation analysis methods and the spatial Durbin model. The results show that the urban population density distribution is characterized by aggregation in general and varies on weekends and weekdays. The changes in population density within a day present a trend of "rapid growth-gentle decline-rapid growth-rapid decline". Furthermore, the spatial spillover effects of land use exist and play the same important roles in population density distribution as the direct effects. Additionally, different types of land use show diverse direct effects and spatial spillover effects at various times. These findings suggest that balancing the population density distribution should consider the indirect effect from neighboring areas, which hopefully provide implications for urban planners and policy makers in utilizing the rational allocation of public resources and regarding optimization of urban spatial structure.
Topics: China; Cities; Humans; Population Density; Spatial Analysis; Urban Population; Urbanization
PubMed: 34831916
DOI: 10.3390/ijerph182212160 -
Trends in Ecology & Evolution May 2019Mutational input is the ultimate source of genetic variation, but mutations are not thought to affect the direction of adaptive evolution. Recently, critics of standard... (Review)
Review
Mutational input is the ultimate source of genetic variation, but mutations are not thought to affect the direction of adaptive evolution. Recently, critics of standard evolutionary theory have questioned the random and non-directional nature of mutations, claiming that the mutational process can be adaptive in its own right. We discuss here mutation bias in adaptive evolution. We find little support for mutation bias as an independent force in adaptive evolution, although it can interact with selection under conditions of small population size and when standing genetic variation is limited, entirely consistent with standard evolutionary theory. We further emphasize that natural selection can shape the phenotypic effects of mutations, giving the false impression that directed mutations are driving adaptive evolution.
Topics: Biological Evolution; Evolution, Molecular; Models, Genetic; Mutation; Phenotype; Population Density; Selection, Genetic
PubMed: 31003616
DOI: 10.1016/j.tree.2019.01.015 -
Theoretical Population Biology Aug 2022The site frequency spectrum (SFS) is an important statistic that summarizes the molecular variation in a population, and is used to estimate population-genetic...
The site frequency spectrum (SFS) is an important statistic that summarizes the molecular variation in a population, and is used to estimate population-genetic parameters and detect natural selection. Here, we study the SFS in a randomly mating, diploid population in which both the population size and selection coefficient vary periodically with time using a diffusion theory approach, and derive simple analytical expressions for the time-averaged SFS in slowly and rapidly changing environments. We show that for strong selection and in slowly changing environments where the population experiences both positive and negative cycles of the selection coefficient, the time-averaged SFS differs significantly from the equilibrium SFS in a constant environment. The deviation is found to depend on the time spent by the population in the deleterious part of the selection cycle and the phase difference between the selection coefficient and population size, and can be captured by an effective population size.
Topics: Genetics, Population; Models, Genetic; Population Density; Selection, Genetic
PubMed: 35809866
DOI: 10.1016/j.tpb.2022.07.001 -
The Journal of Animal Ecology Apr 2021Nearly 100 years ago, Charles Elton described lemming and vole population cycles as ecological models for understanding population regulation in nature. Yet, the...
Nearly 100 years ago, Charles Elton described lemming and vole population cycles as ecological models for understanding population regulation in nature. Yet, the mechanisms driving these cycles are still not fully understood. These rodent populations can continue to cycle in the absence of predation and with food supplementation, and represent a major unsolved problem in population ecology. It has been hypothesized that the social environment at high population density can drive selection for a low-reproduction phenotype, resulting in population self-regulation as an intrinsic mechanism driving the cycles. However, a physiological mechanism for this self-regulation has not been demonstrated. We manipulated population density in wild meadow voles Microtus pennsylvanicus using large-scale field enclosures over 3 years and examined reproductive performance and physiology. Within the field enclosures, we assessed the proportion of breeding animals, mass at sexual maturation, and faecal androgen and oestrogen metabolites. We then collected brain tissue from juvenile voles born at high or low density, quantified mRNA expression of gonadotropin-releasing hormone (GnRH) and oestrogen receptor alpha (ERα) and measured DNA methylation at six CpG sites in a region that was highly conserved with the mouse GnRH promoter. At high density, there was a lower proportion of reproductive animals. Juvenile voles born at high densities had reduced expression of GnRH in the hypothalamus, accompanied by marginally lower faecal sex hormone metabolites. Female juvenile voles born at high density also had higher methylation levels at two CpG sites while males did not, aligning with prior observations that females (but not males) from high-density environments retain reduced reproduction long term. Our results support a physiological basis for population self-regulation in vole cycles, as altering population density alone induced reproductive downregulation at the hypothalamic level. Our results demonstrate that altering the early-life social environment can fundamentally impact reproductive function in the brain. This, in turn, can drive population demography changes in wild animals.
Topics: Animals; Arvicolinae; Female; Gonadotropin-Releasing Hormone; Male; Mice; Population Density; Reproduction; Self-Control
PubMed: 33550586
DOI: 10.1111/1365-2656.13430 -
Ecology Letters Apr 2019We address two fundamental ecological questions: what are the limits to animal population density and what determines those limits? We develop simple alternative models...
We address two fundamental ecological questions: what are the limits to animal population density and what determines those limits? We develop simple alternative models to predict population limits in relation to body mass. A model assuming that within-species area use increases with the square of daily travel distance broadly predicts the scaling of empirical extremes of minimum density across birds and mammals. Consistent with model predictions, the estimated density range for a given mass, 'population scope', is greater for birds than for mammals. However, unlike mammals and carnivorous birds, expected broad relationships between body mass and density extremes are not supported by data on herbivorous and omnivorous birds. Our results suggest that simple constraints on mobility and energy use/supply are major determinants of the scaling of density limits, but further understanding of interactions between dietary constraints and density limits are needed to predict future wildlife population responses to anthropogenic threats.
Topics: Animals; Birds; Carnivora; Mammals; Models, Biological; Population Density
PubMed: 30724435
DOI: 10.1111/ele.13227 -
Ecology Letters Apr 2022Harvesting can magnify the destabilising effects of environmental perturbations on population dynamics and, thereby, increase extinction risk. However,...
Harvesting can magnify the destabilising effects of environmental perturbations on population dynamics and, thereby, increase extinction risk. However, population-dynamic theory predicts that impacts of harvesting depend on the type and strength of density-dependent regulation. Here, we used logistic population growth models and an empirical reindeer case study to show that low to moderate harvesting can actually buffer populations against environmental perturbations. This occurs because of density-dependent environmental stochasticity, where negative environmental impacts on vital rates are amplified at high population density due to intra-specific resource competition. Simulations from our population models show that even low levels of harvesting may prevent overabundance, thereby dampening population fluctuations and reducing the risk of population collapse and quasi-extinction following environmental perturbations. Thus, depending on the species' life history and the strength of density-dependent environmental drivers, low to moderate harvesting can improve population resistance to increased climate variability and extreme weather expected under global warming.
Topics: Logistic Models; Population Density; Population Dynamics
PubMed: 35103374
DOI: 10.1111/ele.13963