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Microscopy (Oxford, England) Dec 2020Sherds of ancient ceramics potteries, dating back to the seventh century BC and excavated from southern Italy, were analyzed in terms of microstructure and porosity...
Sherds of ancient ceramics potteries, dating back to the seventh century BC and excavated from southern Italy, were analyzed in terms of microstructure and porosity (SEM), elemental composition (EDX), chemical bonding and mineralogical components (FTIR) in order to establish correlation with firing temperature, firing condition and provenance. Si/Al ratio from EDX analysis showed three major categories of raw materials (illite/montmorillonite, kaolinite and mullite), suggesting difference in provenance. Uniformly sized silica nanoparticle (0.7 μm diameter) and trace amount of silver are being reported for the first time in one sample. Anorthite mineral and quartz inclusion was detected by FTIR in certain samples. All samples showed a prominent band for Si-O stretching, which shifted from 1062 cm-1, broadened and appeared as doublet, relative to processing temperature. FTIR results proved incomplete dihydroxylation and undissociated carbonate in three samples, indicating a firing temperature of 700-800°C, whereas other samples were fired above 900°C. Only one sample among these three showed bloating pores in between interconnecting glassy matrix in SEM image, indicating a firing temperature of 1100-1200°C. The absence of magnetite along with significant Fe and Mn content indicated the formation of jacobsite, an iron manganese spinel complex, MnFe2O4, which is responsible for the black gloss effect in two particular samples and can be further confirmed by XRD. The presence of numerous small pores in SEM image of one of these two samples (1.2 μm diameter) was indicative of extended vitrification at higher temperature than the other one. However, magnetite was responsible for black gloss effect in two other samples, proving difference in provenance. Therefore, SEM-EDX and FTIR results can offer valuable insight into the firing conditions, gloss decoration and provenance of ancient ceramic potteries.
PubMed: 32589209
DOI: 10.1093/jmicro/dfaa034 -
Physiologia Plantarum Jan 2022The present study explores the interaction of water supply and rhizobia inoculation on CO and H O gas exchange characteristics, physiological and biochemical traits in...
The present study explores the interaction of water supply and rhizobia inoculation on CO and H O gas exchange characteristics, physiological and biochemical traits in seedlings of Robinia pseudoacacia L. originating from two provenances with contrasting climate and soil backgrounds: the Gansu Province (GS) in northwest China and the Dongbei region (DB) of northeast China. Rhizobia strains were isolated from the 50-years old Robinia forest sites grown in the coastal region of east China. Robinia seedlings with and without rhizobia inoculation were exposed to normal water supply, moderate drought, and rewatering treatments, respectively. After 2 weeks of drought treatment, photosynthetic and physiological traits (net photosynthetic rate, stomatal conductance, stable isotope signature of carbon, malondialdehyde and hydrogen peroxide content) of Robinia leaves were significantly altered, but after rewatering, a general recovery was observed. Rhizobia inoculation significantly increased the drought resistance of both Robinia provenances by promoting photosynthesis, increasing the foliar N content and reducing the accumulation of malondialdehyde and hydrogen peroxide. Among the two provenances, DB plants developed more nodules than GS plants, but GS plants were more drought-tolerant than DB plants, both inoculated or noninoculated, indicated by the foliar gas exchange parameters and biochemical traits studied. Our results also show that inoculation of rhizobia could significantly improve the drought resistance of Robinia in both provenances. The present study contributes to the scientific background for the selection of drought-resistant varieties of Robinia to ensure the success of future afforestation projects in degraded terrestrial ecosystems under global climate change.
Topics: Dehydration; Ecosystem; Rhizobium; Robinia; Stress, Physiological; Symbiosis
PubMed: 35112359
DOI: 10.1111/ppl.13641 -
IEEE Transactions on Visualization and... Jan 2016While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the...
While the primary goal of visual analytics research is to improve the quality of insights and findings, a substantial amount of research in provenance has focused on the history of changes and advances throughout the analysis process. The term, provenance, has been used in a variety of ways to describe different types of records and histories related to visualization. The existing body of provenance research has grown to a point where the consolidation of design knowledge requires cross-referencing a variety of projects and studies spanning multiple domain areas. We present an organizational framework of the different types of provenance information and purposes for why they are desired in the field of visual analytics. Our organization is intended to serve as a framework to help researchers specify types of provenance and coordinate design knowledge across projects. We also discuss the relationships between these factors and the methods used to capture provenance information. In addition, our organization can be used to guide the selection of evaluation methodology and the comparison of study outcomes in provenance research.
PubMed: 26340779
DOI: 10.1109/TVCG.2015.2467551 -
International Journal of Medical... Jan 2019Reproducibility of research studies is key to advancing biomedical science by building on sound results and reducing inconsistencies between published results and study...
OBJECTIVE
Reproducibility of research studies is key to advancing biomedical science by building on sound results and reducing inconsistencies between published results and study data. We propose that the available data from research studies combined with provenance metadata provide a framework for evaluating scientific reproducibility. We developed the ProvCaRe platform to model, extract, and query semantic provenance information from 435, 248 published articles.
METHODS
The ProvCaRe platform consists of: (1) the S3 model and a formal ontology; (2) a provenance-focused text processing workflow to generate provenance triples consisting of subject, predicate, and object using metadata extracted from articles; and (3) the ProvCaRe knowledge repository that supports "provenance-aware" hypothesis-driven search queries. A new provenance-based ranking algorithm is used to rank the articles in the search query results.
RESULTS
The ProvCaRe knowledge repository contains 48.9 million provenance triples. Seven research hypotheses were used as search queries for evaluation and the resulting provenance triples were analyzed using five categories of provenance terms. The highest number of terms (34%) described provenance related to population cohort followed by 29% of terms describing statistical data analysis methods, and only 5% of the terms described the measurement instruments used in a study. In addition, the analysis showed that some articles included a higher number of provenance terms across multiple provenance categories suggesting a higher potential for reproducibility of these research studies.
CONCLUSION
The ProvCaRe knowledge repository (https://provcare.
CASE
edu/) is one of the largest provenance resources for biomedical research studies that combines intuitive search functionality with a new provenance-based ranking feature to list articles related to a search query.
Topics: Algorithms; Biological Ontologies; Biomedical Research; Humans; Metadata; Reproducibility of Results; Semantics
PubMed: 30545485
DOI: 10.1016/j.ijmedinf.2018.10.009 -
Plant Biology (Stuttgart, Germany) Dec 2022The current projections of climate change might exceed the ability of European forest trees to adapt to upcoming environmental conditions. However, stomatal and leaf...
The current projections of climate change might exceed the ability of European forest trees to adapt to upcoming environmental conditions. However, stomatal and leaf morphological traits could greatly influence the acclimation potential of forest tree species subjected to global warming, including the single most important forestry species in Europe, European beech. We analysed stomatal (guard cell length, stomatal density and potential conductance index) and leaf (leaf area, leaf dry weight and leaf mass per area) morphological traits of ten provenances from two provenance trials with contrasting climates between 2016 and 2020. The impact of meteorological conditions of the current and preceding year on stomatal and leaf traits was tested by linear and quadratic regressions. Ecodistance was used to capture the impact of adaptation after the transfer of provenances to new environments. Interactions of trial-provenance and trial-year factors were significant for all measured traits. Guard cell length was lowest and stomatal density was highest across beech provenances in the driest year, 2018. Adaptation was also reflected in a significant relationship between aridity ecodistance and measured traits. Moreover, the meteorological conditions of the preceding year affected the interannual variability of stomatal and leaf traits more than the meteorological conditions of the spring of the current year, suggesting the existence of plant stress memory. High intraspecific variability of stomatal and leaf traits controlled by the interaction of adaptation, acclimation and plant memory suggests a high acclimation potential of European beech provenances under future conditions of global climate change.
Topics: Fagus; Climate Change; Plant Leaves; Trees; Acclimatization
PubMed: 35238138
DOI: 10.1111/plb.13401 -
The Science of the Total Environment Nov 2022Temperate trees could cope with climate change through phenotypic plasticity of phenological key events or adaptation in situ via selection on genetic variation....
Temperate trees could cope with climate change through phenotypic plasticity of phenological key events or adaptation in situ via selection on genetic variation. However, the relative contribution of local adaptation and phenotypic plasticity to phenological change is unclear for many ecologically important tree species. Here, we analyzed the leaf-out data of European beech (Fagus sylvatica L.) from 50 provenances planted in 7 trial sites. We first constructed a function between chilling accumulation (CA) and photoperiod-associated heat requirement (PHR) of leaf-out date for each provenance and quantified the relationship between parameters of the CA-PHR function and climatic variables at provenance origins by using the random forest model. Furthermore, we used the provenance-specific CA-PHR function to simulate future leaf-out dates under two climate change scenarios (RCP 4.5 and 8.5) and two assumptions (no adaptation and adaptation). The results showed that both CA, provenance, and their interactions affected the PHR of leaf-out. The provenances from southeastern Europe exhibited a stronger response of PHR to CA and thus flushed earlier than northwestern provenances. The parameters of the CA-PHR function were connected with climatic variables (e.g., mean diurnal temperature range, temperature seasonality) at the originating sites of each provenance. If only considering the phenotypic plasticity, the leaf-out date of European beech in 2070-2099 will advance by 6.8 and 9.0 days on average relative to 1951-2020 under RCP 4.5 and RCP 8.5, respectively. However, if F. sylvatica adapts to future climate change by adopting the current strategy, the advance of the leaf-out date will weaken by 1.4 and 3.4 days under RCP 4.5 and RCP 8.5, respectively. Our results suggest that the European beech could slow down its spring phenological advances and reduce its spring frost risk if it adopts the current strategy to adapt to future climate change.
Topics: Adaptation, Physiological; Climate Change; Fagus; Plant Leaves; Seasons; Temperature
PubMed: 35878847
DOI: 10.1016/j.scitotenv.2022.157540 -
Heliyon Dec 2021The upper Cretaceous Lokoja Formation is the earliest deposited stratigraphic unit in the intracratonic Bida Basin, Nigeria. It consists predominantly of sandstone and...
The upper Cretaceous Lokoja Formation is the earliest deposited stratigraphic unit in the intracratonic Bida Basin, Nigeria. It consists predominantly of sandstone and offers a potential hydrocarbon reservoir in the basin. In this study, we investigated the bulk elemental (major, trace and rare earth elements) and mineralogical compositions of the sandstones for the determination of their compositional maturity, tectonic setting, source and weathering history. The sandstone geochemical data indicates that the samples contain moderate amount of SiO and AlO with average values of 78.3 % and 9.75 % respectively. Relatively high average values of KO (1.59 %) and NaO (1.52 %) and low FeO (2.56 %), MnO (0.05 %), TiO (0.31 %) and PO (0.018 %) were obtained. Plots of relevant geochemical elements reveal that the sandstones are predominantly arkose and litharenite types with minor sub-litharenites. Application of some trace element geochemical proxies; La/Co (11.78), Th/Co (1.32), La/Th (7.04) and Eu/Eu∗ (0.82) to constrain the source history suggest protolith dominated by felsic rock. Relatively low average values of ΣREEs (12.81) and ΣHREEs (1.52) support the felsic provenance of the sandstones and the tectonic setting discriminant function plots indicate passive margin depositional basin. Paleo-weathering plot reveals a moderate humid climatic condition and the mean values of CIA (79.21), CIW (90.51), PIA (66.55) and A-CN-K diagram indicates low to moderate chemical weathering in the source area and compositional immaturity for the sediments. This study concludes that the sandstones of the Lokoja Formation are immature and were derived from the faulted blocks of granitic basement rocks at the margin of the basin and deposited proximally.
PubMed: 34917824
DOI: 10.1016/j.heliyon.2021.e08564 -
The Science of the Total Environment Oct 2016Restoration efforts in the Mediterranean Basin have been changing from a silvicultural to an ecological restoration approach. Yet, to what extent the projects are guided...
Restoration efforts in the Mediterranean Basin have been changing from a silvicultural to an ecological restoration approach. Yet, to what extent the projects are guided by ecological restoration principles remains largely unknown. To analyse this issue, we built an on-line survey addressed to restoration practitioners. We analysed 36 restoration projects, mostly from drylands (86%). The projects used mainly soil from local sources. The need to comply with legislation was more important as a restoration motive for European Union (EU) than for non-EU countries, while public opinion and health had a greater importance in the latter. Non-EU countries relied more on non-native plant species than EU countries, thus deviating from ecological restoration guidelines. Nursery-grown plants used were mostly of local or regional provenance, whilst seeds were mostly of national provenance. Unexpected restoration results (e.g. inadequate biodiversity) were reported for 50% of the projects and restoration success was never evaluated in 22%. Long term evaluation (>6years) was only performed in 31% of cases, and based primarily on plant diversity and cover. The use of non-native species and species of exogenous provenances may: i) entail the loss of local genetic and functional trait diversity, critical to cope with drought, particularly under the predicted climate change scenarios, and ii) lead to unexpected competition with native species and/or negatively impact local biotic interactions. Absent or inappropriate monitoring may prevent the understanding of restoration trajectories, precluding adaptive management strategies, often crucial to create functional ecosystems able to provide ecosystem services. The overview of ecological restoration projects in the Mediterranean Basin revealed high variability among practices and highlighted the need for improved scientific assistance and information exchange, greater use of native species of local provenance, and more long-term monitoring and evaluation, including functional and ecosystem services' indicators, to improve and spread the practice of ecological restoration.
Topics: Africa, Northern; Biota; Environmental Restoration and Remediation; Mediterranean Region; Middle East; Plants; Soil
PubMed: 27239715
DOI: 10.1016/j.scitotenv.2016.05.136 -
International Journal of Data Science... 2022Social media has been playing a vital importance in information sharing at massive scale due to its easy access, low cost, and faster dissemination of information. Its...
Social media has been playing a vital importance in information sharing at massive scale due to its easy access, low cost, and faster dissemination of information. Its competence to disseminate the information across a wide audience has raised a critical challenge to determine the social data provenance of digital content. describes the origin, derivation process, and transformations of social content throughout its lifecycle. In this paper, we present a Framework for key-value pair (KVP) database using the novel concept of . In our proposed framework, a huge volume of social data is first fetched from the social media (Twitter's Network) through live streaming and simultaneously modelled in a KVP database by using a query-driven approach. The proposed framework is capable in capturing, storing, and querying provenance information for different query sets including select, aggregate, standing/historical, and data update (i.e., insert, delete, update) queries on . We evaluate the performance of proposed framework in terms of provenance capturing overhead for different query sets including select, aggregate, and data update queries, and average execution time for various provenance queries.
PubMed: 34778513
DOI: 10.1007/s41060-021-00287-9 -
Frontiers in Plant Science 2022Vessels are responsible for an efficient and safe water transport in angiosperm xylem. Whereas large vessels efficiently conduct the bulk of water, small vessels might...
Vessels are responsible for an efficient and safe water transport in angiosperm xylem. Whereas large vessels efficiently conduct the bulk of water, small vessels might be important under drought stress or after winter when large vessels are embolized. Wood anatomy can adjust to the environment by plastic adaptation, but is also modified by genetic selection, which can be driven by climate or other factors. To distinguish between plastic and genetic components on wood anatomy, we used a trial where trees from ten Central European provenances were planted in three locations in Austria along a rainfall gradient. Because wood anatomy also adjusts to tree size and in ring-porous species, the vessel size depends on the amount of latewood and thereby ring width, we included tree size and ring width in the analysis. We found that the trees' provenance had a significant effect on average vessel area (VA), theoretical specific hydraulic conductivity (Ks), and the vessel fraction (VF), but correlations with annual rainfall of provenances were at best weak. The trial site had a strong effect on growth (ring width, RW), which increased from the driest to the wettest site and wood density (WD), which increased from wet to dry sites. Significant site x provenance interactions were seen only for WD. Surprisingly, the drier site had higher VA, higher VF, and higher Ks. This, however, is mainly a result of greater RW and thus a greater proportion of latewood in the wetter forest. The average size of vessels > 70 μm diameter increased with rainfall. We argue that Ks, which is measured per cross-sectional area, is not an ideal parameter to compare the capacity of ring-porous trees to supply leaves with water. Small vessels (<70 μm) on average contributed only 1.4% to Ks, and we found no evidence that their number or size was adaptive to aridity. RW and tree size had strong effect on all vessel parameters, likely the greater proportion of latewood in wide rings. This should be accounted for when searching for wood anatomical adaptations to the environment.
PubMed: 35574121
DOI: 10.3389/fpls.2022.795941