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Infection and Drug Resistance 2021To investigate the genomic and plasmid characteristics of a newly discovered strain with a -carrying plasmid and novel integron In isolated from a cerebrospinal fluid...
PURPOSE
To investigate the genomic and plasmid characteristics of a newly discovered strain with a -carrying plasmid and novel integron In isolated from a cerebrospinal fluid specimen in a teaching hospital.
METHODS
Species identification was performed by MALDI-TOF MS, and was identified by PCR and Sanger sequencing. Whole-genome sequencing analysis was conducted using the Illumina NovaSeq 6000 and Oxford Nanopore platforms. Integron detection was performed using INTEGRALL. The phylogenetic tree was constructed by using kSNP3.0. Plasmid characteristics were assessed by S1-pulsed-field gel electrophoresis (S1-PFGE), Southern blotting, conjugation experiments, and whole-genome sequencing analysis. Comparative genomics analysis of the plasmid and genetic context of were conducted by using BLAST Ring Image Generator (BRIG) and Easyfig 2.3, respectively.
RESULTS
ZDHY95, an MDR strain of harboring , was identified. It was sensitive only to amikacin and was resistant to carbapenems, β-lactams, aztreonam, fluoroquinolones, and aminoglycosides. Joint S1-PFGE, Southern blot, conjugation assay, and whole-genome sequencing experiments confirmed that the gene was located within class I integron In of the plasmid and that the surrounding genetic environment was 5'CS- --3'CS. The novel class I integron In was detected on the chromosome of ZDHY95, and the gene cassette array was 5'CS- --3'CS. Phylogenetic analysis showed that antimicrobial resistance gene-carrying isolates were divided into two clusters, mainly containing isolates from the USA and Pakistan.
CONCLUSION
A novel -carrying conjugative plasmid, pZDHY95-VIM-2, was reported for the first time in , elucidating the genetic environment and transfer mechanism. The gene structure of the novel class I integron In was also clarified. We explored the phylogenetic relationship of with drug resistance genes and suggested that with metallo-β-lactamases (MBLs) in the hospital environment may cause infection in patients with long-term intubation or after interventional surgery.
PubMed: 34466007
DOI: 10.2147/IDR.S320294 -
Molecular Plant-microbe Interactions :... Sep 2023spp. make up 1.6% of the bacteria in the soil and are found throughout the world. More than 140 species of this genus have been identified, some beneficial to the...
spp. make up 1.6% of the bacteria in the soil and are found throughout the world. More than 140 species of this genus have been identified, some beneficial to the plant. Several species in the family Pseudomonadaceae, including AvOP, A1501, DSM4166, 6HT33bT, and sp. strain K1 can fix nitrogen from the air. The genes required for these reactions are organized in a nitrogen fixation island, obtained via horizontal gene transfer from , , and . Today, this island is conserved in spp. from different geographical locations, which, in turn, have evolved to deal with different geo-climatic conditions. Here, we summarize the molecular mechanisms behind -driven plant growth promotion, with particular focus on improving plant performance at limiting nitrogen (N) and improving plant N content. We describe -plant interaction strategies in the soil, noting that the mechanisms of denitrification, ammonification, and secondary metabolite signaling are only marginally explored. Plant growth promotion is dependent on the abiotic conditions and differs at sufficient and deficient N. The molecular controls behind different plant responses are not fully elucidated. We suggest that superposition of transcriptome, proteome, and metabolome data and their integration with plant phenotype development through time will help fill these gaps. The aim of this review is to summarize the knowledge behind -driven nitrogen fixation and to point to possible agricultural solutions. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
PubMed: 36989040
DOI: 10.1094/MPMI-10-22-0223-CR -
Journal of Medical Case Reports Oct 2021Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the environment, and it has also been isolated as an opportunistic pathogen from... (Review)
Review
BACKGROUND
Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the environment, and it has also been isolated as an opportunistic pathogen from humans. It is a Gram-negative bacterium and a common inhabitant of soil and water.
CASE PRESENTATION
We report the case of a 51-year-old arab gentleman who has systemic lupus erythematous complicated by lupus nephritis and underwent renal transplantation twice. He underwent mitral valve replacement and 4 years later was diagnosed with prosthetic valve endocarditis caused by Pseudomonas stutzeri.
CONCLUSIONS
Literature review was conducted and revealed that this pathogen may be of a particular medical relevance in immunocompromised patients. Our case proves that early infection and relapse despite optimal antibiotics course are possible outcomes of Pseudomonas stutzeri endocarditis. To the best of our knowledge, this is the second case of fulminant early prosthetic valve endocarditis occurring only 1 month post-cardiac surgery with relapse despite a complete antibiotics course.
Topics: Anti-Bacterial Agents; Endocarditis, Bacterial; Heart Valve Prosthesis; Humans; Male; Middle Aged; Pseudomonas stutzeri
PubMed: 34627386
DOI: 10.1186/s13256-021-03084-x -
Journal of Applied Microbiology Feb 2015To investigate the effect of culture conditions and medium components on exopolysaccharide (EPS) production by Pseudomonas stutzeri AS22 and to access the EPS...
AIMS
To investigate the effect of culture conditions and medium components on exopolysaccharide (EPS) production by Pseudomonas stutzeri AS22 and to access the EPS performance as a metal-binding exopolysaccharide.
METHODS AND RESULTS
The EPS production conditions of Ps. stutzeri AS22 in submerged culture were optimized using two approaches for EPS quantification, and its metal-binding capacity was evaluated using both single and mixed metal ions systems. Maximum EPS level was achieved after 24 h of incubation at 30°C with an initial pH of 8.0, 250 rev min(-1) stirring level and 10% inoculum size. 50 g l(-1) starch, 5 g l(-1) yeast extract, 0.5 g l(-1) NaCl, 1.4 g l(-1) K2 HPO4, 0.4 g l(-1) MgSO4, 0.4 g l(-1) CaCl2 and 1 g l(-1) mannose were found to be the most suitable carbon, nitrogen, mineral and additional carbohydrate sources, respectively. From metal-binding experiments, the crude EPS showed interesting metal adsorption capacity adopting the order Pb >> Co > Fe > Cu >> Cd. Lead was preferentially biosorbed with a maximal uptake of 460 mg g(-1) crude EPS.
CONCLUSIONS
Under the optimal culture requirements, EPS level reached 10.2 g l(-1) after 24 h of fermentation, seven times more than the production under initial conditions. According to the metal-binding assay, the crude EPS has potential to be used as a novel biosorbent in the treatment of heavy metals-contaminated water.
SIGNIFICANCE AND IMPACT OF THE STUDY
Our results are interesting in terms of yield as well as efficiency for the potential use of the Ps. stutzeri exopolysaccharide as a metal-absorbent polymer in the bioremediation field.
Topics: Carbon; Fermentation; Metals, Heavy; Nitrogen; Polysaccharides, Bacterial; Pseudomonas stutzeri
PubMed: 25376444
DOI: 10.1111/jam.12688 -
Plant Physiology and Biochemistry : PPB Oct 2023This study investigated the effect of Pseudomonas stutzeri inoculation on Lemna minor treated with Cu(OH) nanopesticide (NP). The results showed that P. stutzeri...
Pseudomonas stutzeri improves the tolerance of Lemna minor to Cu(OH) nanopesticide by regulating the uptake of copper, antioxidant defense mechanisms, and the expression of metacaspase-1, chlorophyllase, and stress-responsive genes.
This study investigated the effect of Pseudomonas stutzeri inoculation on Lemna minor treated with Cu(OH) nanopesticide (NP). The results showed that P. stutzeri inoculation increased the relative growth rate (RGR) in NP-treated plants. Although chlorophyll and carotenoid contents decreased significantly in NP-treated plants, P. stutzeri inoculation led to an increase in chlorophyll and carotenoid contents in NP-treated plants. Copper (Cu) content increased with increasing NP concentration, but it decreased significantly in the presence of P. stutzeri. NP treatment caused increased HO and TBARS levels, as well as proline levels. However, P. stutzeri inoculation led to decreased HO and TBARS levels and increased SOD, POX, GST, GR, GPX, and DHAR activities. The expression of genes encoding SOD, GST, metacaspase-1, and chlorophyllase was upregulated by NP treatment alone. Additionally, when plants were inoculated with P. stutzeri, the expression of these genes was further enhanced. In conclusion, P. stutzeri inoculation had a positive effect on the growth and antioxidant system of L. minor treated with NP as it enhanced RGR, increased chlorophyll and carotenoid contents, and decreased Cu content and oxidative stress. These findings suggested that P. stutzeri has the potential to promote aquatic plant growth and counteract the negative impacts of NP on these plants.
PubMed: 37699291
DOI: 10.1016/j.plaphy.2023.108002 -
Genes May 2022A1501, a plant-associated diazotrophic bacterium, prefers to conform to a nitrogen-fixing biofilm state under nitrogen-deficient conditions. The extracytoplasmic...
A1501, a plant-associated diazotrophic bacterium, prefers to conform to a nitrogen-fixing biofilm state under nitrogen-deficient conditions. The extracytoplasmic function (ECF) sigma factor AlgU is reported to play key roles in exopolysaccharide (EPS) production and biofilm formation in the genus; however, the function of AlgU in A1501 is still unclear. In this work, we mainly investigated the role of in EPS production, biofilm formation and nitrogenase activity in A1501. The mutant Δ showed a dramatic decrease both in the EPS production and the biofilm formation capabilities. In addition, the biofilm-based nitrogenase activity was reduced by 81.4% in the Δ mutant. The transcriptional level of , a key Psl-like (a major EPS in A1501) synthesis-related gene, was almost completely inhibited in the mutant and was upregulated by 2.8-fold in the -overexpressing strain. A predicted AlgU-binding site was identified in the promoter region of . The DNase I footprinting assays indicated that AlgU could directly bind to the promoter, and β-galactosidase activity analysis further revealed mutations of the AlgU-binding boxes drastically reduced the transcriptional activity of the promoter; moreover, we also demonstrated that AlgU was positively regulated by RpoN at the transcriptional level and negatively regulated by the RNA-binding protein RsmA at the posttranscriptional level. Taken together, these data suggest that AlgU promotes EPS production and nitrogen-fixing biofilm formation by directly activating the transcription of , and the expression of AlgU is controlled by RpoN and RsmA at different regulatory levels.
Topics: Bacterial Proteins; Biofilms; Gene Expression Regulation, Bacterial; Nitrogen; Nitrogenase; Pseudomonas stutzeri; Sigma Factor
PubMed: 35627252
DOI: 10.3390/genes13050867 -
Environmental Research Feb 2023Wastewater treatment plants (WWTP) are considered sources of bioaerosols emission that negatively affects the surrounding atmosphere. This study focused on Pseudomonas...
Wastewater treatment plants (WWTP) are considered sources of bioaerosols emission that negatively affects the surrounding atmosphere. This study focused on Pseudomonas sp. Emissions in bioaerosols from a WWTP that adopts the AO treatment process, and their inactivation through ultraviolet (UV) radiation. High-throughput sequencing was used to assay the microbial population, and functional composition profiles were predicted using 16 S rRNA sequencing data with PICRUSt2. Recorded emission levels of airborne bacteria and Pseudomonas sp. In WWTP were 130 ± 83-6113 ± 3015 CFU/m and 0-6431 ± 1945 CFU/m, respectively. Bioaerosol emissions presented site-related and temporal variation. Over 80% of Pseudomonas sp. Were attached to coarse particles with sizes over 2.1 μm. Bioaerosol concentration and particle-size distribution in the air were closely related to ambient temperature, relative humidity, light intensity, and wind speed. Exposure to 45.67 μW/cm UV radiation led to a significant decline in bioaerosol concentrations in the air, and reduction rate reached 89.16% and 95.77% for airborne bacteria and Pseudomonas sp., respectively. The results suggested that UV radiation can be an effective method in reducing bioaerosols. Compared with other bacteria, Pseudomonas stutzeri and Bacillus sp. Are more resistant to UV radiation. The abundance of antibiotic resistance genes noticeably receded when exposed to UV irradiation. The relative abundance of cationic antimicrobial peptide resistance, categorized under human diseases in KEGG (level 3), significantly decreased in Pseudomonas sp. After 120 min of UV irradiation. This study provides a novel insight into the control of bioaerosol emissions carrying pathogenic bacteria.
Topics: Humans; Wastewater; Air Microbiology; Pseudomonas; Bacteria; Aerosols; Water Purification
PubMed: 36549495
DOI: 10.1016/j.envres.2022.115129 -
Archives of Microbiology Jan 2021The study focuses on the impact of foliar spraying cyanobacterium Spirulina platensis extract and the inoculation with the endophyte N-fixing Pseudomonas stutzeri, and...
The study focuses on the impact of foliar spraying cyanobacterium Spirulina platensis extract and the inoculation with the endophyte N-fixing Pseudomonas stutzeri, and their mixture in the presence of different nitrogen doses on growth and yield of onion under field conditions. Bioactive compounds of Spirulina and Pseudomonas were analyzed by GC-MC and amino acid production of Spirulina by the amino acid analyzer. Hydrogen cyanide (HCN), indole acetic acid (IAA), ammonia (NH), pectinase activity, and N-fixation of Pseudomonas were measured. Plant height (cm), leaf length (cm), number of green leaves, bulb diameter (cm), fresh and dry weight of plant (g), chlorophyll a, b of leaves, bulb weight (g), marketable bulb yield (t. ha), cull bulb weight (t. ha), total bulb yield (t. ha), bulb diameter (cm), total soluble solids (TSS%), dry matter content (DM%), evaluation of storage behavior, and economic feasibility were estimated. Spirulina extract has several bioactive compounds. Pseudomonas can produce HCN, NH, IAA, pectinase, and nitrogen fixation. The application of mixture with recommended dose of nitrogen increases the onion plant parameters, marketable yield, total bulb yield, bulb weight, bulb diameter, TSS%, DM%, net return, benefit-cost ratio (B:C), lowest cumulative weight loss% of bulbs during storage, and reduce culls weight compared with other treatments in two seasons. Application of S. platensis extract and inoculation with endophyte nitrogen-fixing P. stutzeri enhance the growth and productivity of the onion under different doses of nitrogen fertilizer.
Topics: Chlorophyll A; Crops, Agricultural; Endophytes; Fertilizers; Industrial Microbiology; Nitrogen; Nitrogen Fixation; Onions; Plant Leaves; Plant Roots; Pseudomonas stutzeri; Spirulina
PubMed: 32789754
DOI: 10.1007/s00203-020-01991-z -
Microorganisms Jan 2023Paracetamol is one of the most used pharmaceuticals worldwide, but due to its widespread use it is detected in various environmental matrices, such as surface and ground...
Paracetamol is one of the most used pharmaceuticals worldwide, but due to its widespread use it is detected in various environmental matrices, such as surface and ground waters, sediments, soils or even plants, where it is introduced mainly from the discharge of wastewater and the use of sewage sludge as fertilizer in agriculture. Its accumulation in certain organisms can induce reproductive, neurotoxic or endocrine disorders, being therefore considered an emerging pollutant. This study reports on the isolation, from sewage sludge produced in wastewater treatment plants (WWTPs), of bacterial strains capable of degrading paracetamol. Up to 17 bacterial strains were isolated, but only two of them, identified as CSW02 and CSW01, were able to degrade very high concentrations of paracetamol in solution as a sole carbon and energy source, and none of them had been previously described as paracetamol degraders. These bacteria showed the ability to degrade up to 500 mg L of paracetamol in only 6 and 4 h, respectively, much quicker than any other paracetamol-degrader strain described in the literature. The two main paracetamol metabolites, 4-aminophenol and hydroquinone, which present high toxicity, were detected during the degradation process, although they disappeared very quickly for paracetamol concentrations up to 500 mg L. The IC of paracetamol for the growth of these two isolates was also calculated, indicating that CSW01 was more tolerant than CSW02 to high concentrations of paracetamol and/or its metabolites in solution, and this is the reason for the much lower paracetamol degradation by CSW02 at 2000-3000 mg L. These findings indicate that both bacteria are very promising candidates for their use in paracetamol bioremediation in water and sewage sludge.
PubMed: 36677487
DOI: 10.3390/microorganisms11010196 -
Biochimica Et Biophysica Acta. Proteins... Feb 2021The trehalose biosynthesis pathway has recently received attention for therapeutic intervention combating infectious diseases caused by bacteria, helminths or fungi....
The trehalose biosynthesis pathway has recently received attention for therapeutic intervention combating infectious diseases caused by bacteria, helminths or fungi. Trehalose-6-phosphate phosphatase (TPP) is a key enzyme of the most common trehalose biosynthesis pathway and a particularly attractive target owing to the toxicity of accumulated trehalose-6-phosphate in pathogens. Here, we characterised TPP-like proteins from bacterial pathogens implicated in nosocomial infections in terms of their steady-state kinetics as well as pH- and metal-dependency of their enzymatic activity. Analysis of the steady-state kinetics of recombinantly expressed enzymes from Acinetobacter baumannii, Corynebacterium diphtheriae and Pseudomonas stutzeri yielded similar kinetic parameters as those of other reported bacterial TPPs. In contrast to nematode TPPs, the divalent metal ion appears to be bound only weakly in the active site of bacterial TPPs, allowing the exchange of the resident magnesium ion with other metal ions. Enzymatic activity comparable to the wild-type enzyme was observed for the TPP from P. stutzeri with manganese, cobalt and nickel. Analysis of the enzymatic activity of S. maltophilia TPP active site mutants provides evidence for the involvement of four canonical aspartate residues as well as a strictly conserved histidine residue of TPP-like proteins from bacteria in the enzyme mechanism. That histidine residue is a member of an interconnected network of five conserved residues in the active site of bacterial TPPs which likely constitute one or more functional units, directly or indirectly cooperating to enhance different aspects of the catalytic activity.
Topics: Acinetobacter baumannii; Bacterial Infections; Catalytic Domain; Corynebacterium diphtheriae; Glucosyltransferases; Humans; Pseudomonas stutzeri; Sugar Phosphates; Trehalose
PubMed: 33171283
DOI: 10.1016/j.bbapap.2020.140564