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The Science of the Total Environment Feb 2021Cow manure represents a surplus manure waste in agricultural food sectors, which requires proper disposal. Anaerobic digestion, in this regard, has raised global... (Review)
Review
Cow manure represents a surplus manure waste in agricultural food sectors, which requires proper disposal. Anaerobic digestion, in this regard, has raised global interest owing to its apparent environmental benefits, including simultaneous waste diminishment and renewable energy generation. However, dedicated intensifications are necessary to promote the degradation of recalcitrant lignocellulosic components of cow manure. Hence, this manuscript presents a review of how to exploit cow manure in anaerobic digestion through different incentives extensively at lab-scale and full-scale. These strategies comprise 1) co-digestion; 2) pretreatment; 3) introduction of additives (trace metals, carbon-based materials, low-cost composites, nanomaterials, and microbial cultures); 4) innovative systems (bio-electrochemical fields and laser irradiation). Results imply that co-digestion and pretreatment approaches gain the predominance on promoting the digestion performance of cow manure. Particularly, for the co-digestion scenario, the selection of lignin-poor co-substrate is highlighted to produce maximum synergy and pronounced removal of lignocellulosic compounds of cow manure. Mechanical, thermal, and biological (composting) pretreatments generate mild improvement at laboratory-scale and are proved applicable in full-scale facilities. It is noteworthy that the introduction of additives (Fe-based nanomaterials, carbon-based materials, and composites) is acquiring more attention and shows promising full-scale application potential. Finally, bio-electrochemical fields stand out in laboratory trials and may serve as future reactor modules in agricultural anaerobic digestion installations treating cow manure.
Topics: Anaerobiosis; Animals; Biofuels; Bioreactors; Cattle; Female; Laboratories; Manure; Methane
PubMed: 33348487
DOI: 10.1016/j.scitotenv.2020.142940 -
Bioengineered Mar 2022In the past decades, considerable attention has been directed toward anaerobic digestion (AD), which is an effective biological process for converting diverse organic... (Review)
Review
In the past decades, considerable attention has been directed toward anaerobic digestion (AD), which is an effective biological process for converting diverse organic wastes into biogas, volatile fatty acids (VFAs), biohydrogen, etc. The microbial bioprocessing takes part during AD is of substantial significance, and one of the crucial approaches for the deep and adequate understanding and manipulating it toward different products is process microbiology. Due to highly complexity of AD microbiome, it is critically important to study the involved microorganisms in AD. In recent years, in addition to traditional methods, novel molecular techniques and meta-omics approaches have been developed which provide accurate details about microbial communities involved AD. Better understanding of process microbiomes could guide us in identifying and controlling various factors in both improving the AD process and diverting metabolic pathway toward production of selective bio-products. This review covers various platforms of AD process that results in different final products from microbiological point of view. The review also highlights distinctive interactions occurring among microbial communities. Furthermore, assessment of these communities existing in the anaerobic digesters is discussed to provide more insights into their structure, dynamics, and metabolic pathways. Moreover, the important factors affecting microbial communities in each platform of AD are highlighted. Finally, the review provides some recent applications of AD for the production of novel bio-products and deals with challenges and future perspectives of AD.
Topics: Anaerobiosis; Biofuels; Bioreactors; Fatty Acids, Volatile; Hydrogen; Microbiota
PubMed: 35212604
DOI: 10.1080/21655979.2022.2035986 -
Environment International May 2020Thermal hydrolysis pretreatment (THP) has been considered as an advanced approach to enhance the performance of anaerobic digestion treating municipal sludge. However,... (Review)
Review
Thermal hydrolysis pretreatment (THP) has been considered as an advanced approach to enhance the performance of anaerobic digestion treating municipal sludge. However, several drawbacks were also identified with THP including the formation of brown and ultraviolet-quenching compounds that contain recalcitrant dissolved organic nitrogen (rDON). Melanoidins produced from the Maillard reaction between reducing sugar and amino group have been regarded as a representative of such compounds. This review presented the state-of-the-art understanding of the mechanism of melanoidin formation derived from the research of sludge THP, food processing, and model Maillard reaction systems. Special attentions were paid to factors affecting melanoidin formation and their implications to the control of rDON in the sludge THP process. These factors include reactant availability, heating temperature and time, pH, and the presence of metallic ions. It was concluded that efforts need to be focused on elucidating the extent of the Maillard reaction in sludge THP. This paper aims to provide a mechanistic recommendation on the research and control of the THP-resulted rDON in municipal wastewater treatment plants.
Topics: Anaerobiosis; Hydrolysis; Nitrogen; Sewage; Waste Disposal, Fluid; Wastewater
PubMed: 32179317
DOI: 10.1016/j.envint.2020.105629 -
MBio Jun 2021Anaerobic fungi () isolated from the guts of herbivores are powerful biomass-degrading organisms that enhance their degradative ability through the formation of...
Anaerobic fungi () isolated from the guts of herbivores are powerful biomass-degrading organisms that enhance their degradative ability through the formation of cellulosomes, multienzyme complexes that synergistically colocalize enzymes to extract sugars from recalcitrant plant matter. However, a functional understanding of how fungal cellulosomes are deployed to orchestrate plant matter degradation is lacking, as is knowledge of how cellulosome production and function vary throughout the morphologically diverse life cycle of anaerobic fungi. In this work, we generated antibodies against three major fungal cellulosome protein domains, a dockerin, scaffoldin, and glycoside hydrolase (GH) 48 protein, and used them in conjunction with helium ion and immunofluorescence microscopy to characterize cellulosome localization patterns throughout the life cycle of Piromyces finnis when grown on simple sugars and complex cellulosic carbon sources. Our analyses reveal that fungal cellulosomes are cell-localized entities specifically targeted to the rhizoids of mature fungal cells and bodies of zoospores. Examination of cellulosome localization patterns across life stages also revealed that cellulosome production is independent of growth substrate in zoospores but repressed by simple sugars in mature cells. This suggests that further exploration of gene regulation patterns in zoospores is needed and can inform potential strategies for derepressing cellulosome expression and boosting hydrolytic enzyme yields from fungal cultures. Collectively, these findings underscore how life cycle-dependent cell morphology and regulation of cellulosome production impact biomass degradation by anaerobic fungi, insights that will benefit ongoing efforts to develop these organisms and their cellulosomes into platforms for converting waste biomass into valuable bioproducts. Anaerobic fungi () isolated from the guts of herbivores excel at degrading ingested plant matter, making them attractive potential platform organisms for converting waste biomass into valuable products, such as chemicals and fuels. Major contributors to their biomass-hydrolyzing power are the multienzyme cellulosome complexes that anaerobic fungi produce, but knowledge gaps in how cellulosome production is controlled by the cellular life cycle and how cells spatially deploy cellulosomes complicate the use of anaerobic fungi and their cellulosomes in industrial bioprocesses. We developed and used imaging tools to observe cellulosome spatial localization patterns across life stages of the anaerobic fungus under different environmental conditions. The resulting spatial details of how anaerobic fungi orchestrate biomass degradation and uncovered relationships between life cycle progression and regulation of cellulosome production will benefit ongoing efforts to develop anaerobic fungi and their cellulosomes into useful biomass-upgrading platforms.
Topics: Anaerobiosis; Biomass; Cellulosomes; Hydrolysis; Piromyces
PubMed: 34061594
DOI: 10.1128/mBio.00832-21 -
Environmental Microbiology Reports Oct 2022
Topics: Anaerobiosis; Denitrification; Methane; Nitrites; Oxidation-Reduction
PubMed: 35944518
DOI: 10.1111/1758-2229.13114 -
Journal of Environmental Management Feb 2024A series of technologies have been employed in pilot-scale to process digestate, i.e. the byproduct remaining after the anaerobic digestion of agricultural and other...
A series of technologies have been employed in pilot-scale to process digestate, i.e. the byproduct remaining after the anaerobic digestion of agricultural and other wastes, with the aim of recovering nutrients and reducing the load of solids and organics from it, hence improving the quality of digestate for potential subsequent reuse. In this case the digestate originated from a mixture of dairy and animal wastes and a small amount of agricultural wastes. It was processed by the application of several treatments, applied in series, i.e. microfiltration, ultrafiltration, reverse osmosis, selective electrodialysis and combined UV/ozonation. The initially applied membrane filtration methods (micro- and ultra-filtration) removed most of the suspended solids and macromolecules with a combined efficiency of more than 80%, while the reverse osmosis (at the end) removed almost all the remaining solutes (85-100%), producing sufficiently clarified water, appropriate for potential reuse. In the selective electrodialysis unit over 95% of ammonium and potassium were recovered from the feed, along with 55% of the phosphates. Of the latter, 75% was retrieved in the form of struvite.
Topics: Animals; Anaerobiosis; Phosphates; Struvite; Ammonium Compounds; Nutrients
PubMed: 38280247
DOI: 10.1016/j.jenvman.2024.120166 -
Water Research Dec 2018Increasing amounts of saline (waste)water with high concentrations of organic pollutants are generated globally. In the anaerobic (waste)water treatment domain, high...
Increasing amounts of saline (waste)water with high concentrations of organic pollutants are generated globally. In the anaerobic (waste)water treatment domain, high salt concentrations are repeatedly reported to inhibit methanogenic activity and strategies to overcome this toxicity are needed. Current research focuses on the use of potential osmolyte precursor compounds for osmotic stress alleviation in granular anaerobic sludges upon exposure to hypersalinity shocks. Glutamic acid, aspartic acid, lysine, potassium, gelatine, and tryptone were tested for their potential to alleviate osmotic stress in laboratory grown and full - scale granular sludge. The laboratory grown granular sludge was adapted to 5 (R5) and 20 (R20) g Na/L. Full-scale granular sludge was obtained from internal circulation reactors treating tannery (waste)water with influent conductivity of 29.2 (Do) and 14.1 (Li) mS/cm. In batch experiments which focused on specific methanogenic activity (SMA), R5 granular sludge was exposed to a hypersalinity shock of 20 g Na/L. The granular sludge of Do and Li was exposed to a hypersalinity shock of 10 g Na/L with sodium acetate as the sole carbon source. The effects on R20 granular sludge were studied at the salinity level to which the sludge was already adapted, namely 20 g Na/L. Dosing of glutamic acid, aspartic acid, gelatine, and tryptone resulted in increased SMA compared to only acetate fed batches. In batches with added glutamic acid, the SMA increased by 115% (Li), 35% (Do) and 9% (R20). With added aspartic acid, SMA increased by 72% (Li), 26% (Do), 12% (R5) and 7% (R20). The addition of tryptone resulted in SMA increases of 36% (R5), 17% (R20), 179% (Li), and 48% (Do), whereas added gelatine increased the SMA by 30% (R5), 14% (R20), 23% (Li), and 13% (Do). The addition of lysine, meanwhile, gave negative effects on SMA of all tested granular sludges. Potassium at sea water Na/K ratio (27.8 w/w) had a slight positive effect on SMA of Do (7.3%) and Li (10.1%), whereas at double the sea water ratio (13.9% w/w) had no pronounced positive effect. R20 granular sludge was also exposed to hyposalinity shock from 20 down to 5 g Na/L. Glutamate and N-acetyl-β-lysine were excreted by microbial consortium in anaerobic granular sludge adapted to 20 g Na/L upon this exposure to hyposalinity. A potential consequence when applying these results is that saline streams containing specific and hydrolysable proteins can be anaerobically treated without additional dosing of osmolytes.
Topics: Anaerobiosis; Bioreactors; Osmotic Pressure; Sewage; Waste Disposal, Fluid
PubMed: 30308373
DOI: 10.1016/j.watres.2018.09.059 -
Anaerobe Apr 2023Autoimmune diseases are thought to develop as a consequence of various environmental and genetic factors, each of which contributes to dysfunctional immune responses... (Review)
Review
Autoimmune diseases are thought to develop as a consequence of various environmental and genetic factors, each of which contributes to dysfunctional immune responses and/or a breakdown in immunological tolerance towards native structures. Molecular mimicry by microbial components is among the environmental factors thought to promote a breakdown in immune tolerance, particularly through the presence of cross-reactive epitopes shared with the human host. While resident members of the microbiota are essential promoters of human health through immunomodulation, defence against pathogenic colonisation and conversion of dietary fibre into nutritional resources for host tissues, there may be an underappreciated role of these microbes in the aetiology and/or progression of autoimmune disease. An increasing number of molecular mimics are being identified amongst the anaerobic microbiota which structurally resemble endogenous components and, in some cases, for example the human ubiquitin mimic of Bacteroides fragilis and DNA methyltransferase of Roseburia intestinalis, have been associated with promoting antibody profiles characteristic of autoimmune diseases. The persistent exposure of molecular mimics from the microbiota to the human immune system is likely to be involved in autoantibody production that contributes to the pathologies associated with immune-mediated inflammatory disorders. Here-in, examples of molecular mimics that have been identified among resident members of the human microbiota and their ability to induce autoimmune disease through cross-reactive autoantibody production are discussed. Improved awareness of the molecular mimics that exist among human colonisers will help elucidate the mechanisms involved in the breakdown of immune tolerance that ultimately lead to chronic inflammation and downstream disease.
Topics: Humans; Molecular Mimicry; Anaerobiosis; Autoimmune Diseases; Microbiota; Autoantibodies
PubMed: 36940867
DOI: 10.1016/j.anaerobe.2023.102721 -
MSystems Dec 2022Members of the genus thrive in diverse habitats and use a broad range of recalcitrant organic molecules coupled to denitrification or O respiration. To gain a holistic...
Members of the genus thrive in diverse habitats and use a broad range of recalcitrant organic molecules coupled to denitrification or O respiration. To gain a holistic understanding of the model organism EbN1, we studied its catabolic network dynamics in response to 3-(4-hydroxyphenyl)propanoate, phenylalanine, 3-hydroxybenzoate, benzoate, and acetate utilized under nitrate-reducing versus oxic conditions. Integrated multi-omics (transcriptome, proteome, and metabolome) covered most of the catabolic network (199 genes) and allowed for the refining of knowledge of the degradation modules studied. Their substrate-dependent regulation showed differing degrees of specificity, ranging from high with 3-(4-hydroxyphenyl)propanoate to mostly relaxed with benzoate. For benzoate, the transcript and protein formation were essentially constitutive, contrasted by that of anoxia-specific versus oxia-specific metabolite profiles. The matrix factorization of transcriptomic data revealed that the anaerobic modules accounted for most of the variance across the degradation network. The respiration network appeared to be constitutive, both on the transcript and protein levels, except for nitrate reductase (with expression occurring only under nitrate-reducing conditions). The anoxia/nitrate-dependent transcription of denitrification genes is apparently controlled by three FNR-type regulators as well as by NarXL (all constitutively formed). The resequencing and functional reannotation of the genome fostered a genome-scale metabolic model, which is comprised of 655 enzyme-catalyzed reactions and 731 distinct metabolites. The model predictions for growth rates and biomass yields agreed well with experimental stoichiometric data, except for 3-(4-hydroxyphenyl)propanoate, with which 4-hydroxybenzoate was exported. Taken together, the combination of multi-omics, growth physiology, and a metabolic model advanced our knowledge of an environmentally relevant microorganism that differs significantly from other bacterial model strains. Aromatic compounds are abundant constituents not only of natural organic matter but also of bulk industrial chemicals and fuel components of environmental concern. Considering the widespread occurrence of redox gradients in the biosphere, facultative anaerobic degradation specialists can be assumed to play a prominent role in the natural mineralization of organic matter and in bioremediation at contaminated sites. Surprisingly, differential multi-omics profiling of the EbN1 studied here revealed relaxed regulatory stringency across its four main physiological (i.e., O-independent and O-dependent degradation reactions versus denitrification and O respiration). Combining multi-omics analyses with a genome-scale metabolic model aligned with measured growth performances establishes EbN1 as a systems-biology model organism and provides unprecedented insights into how this bacterium functions on a holistic level. Moreover, this experimental platform invites future studies on eco-systems and synthetic biology of the environmentally relevant betaproteobacterial // cluster.
Topics: Anaerobiosis; Propionates; Systems Biology; Nitrates; Benzoates
PubMed: 36445109
DOI: 10.1128/msystems.00685-22 -
International Journal of Environmental... Aug 2022Renewable energy source, such as food waste (FW), has drawn great attention globally due to the energy crisis and the environmental problem. Anaerobic digestion (AD)... (Review)
Review
Renewable energy source, such as food waste (FW), has drawn great attention globally due to the energy crisis and the environmental problem. Anaerobic digestion (AD) mediated by novel microbial consortia is widely used to convert FW to clean energy. Despite of the considerable progress on food waste and FWAD optimization condition in recent years, a comprehensive and predictive understanding of FWAD microbial consortia is absent and therefore represents a major research challenge in FWAD. The review begins with a global view on the FWAD status and is followed by an overview of the role of AD key conditions' association with microbial community variation during the three main energy substances (hydrogen, organic acids, and methane) production by FWAD. The following topic is the historical understanding of the FWAD microorganism through the development of molecular biotechnology, from classic strain isolation to low-throughput sequencing technologies, to high-throughput sequencing technologies, and to the combination of high-throughput sequencing and isotope tracing. Finally, the integration of multi-omics for better understanding of the microbial community activity and the synthetic biology for the manipulation of the functioning microbial consortia during the FWAD process are proposed. Understanding microbial consortia in FWAD helps us to better manage the global renewable energy source.
Topics: Anaerobiosis; Bioreactors; Food; Microbial Consortia; Refuse Disposal
PubMed: 35954875
DOI: 10.3390/ijerph19159519