-
International Journal of Environmental... Aug 2022Renewable energy source, such as food waste (FW), has drawn great attention globally due to the energy crisis and the environmental problem. Anaerobic digestion (AD)... (Review)
Review
Renewable energy source, such as food waste (FW), has drawn great attention globally due to the energy crisis and the environmental problem. Anaerobic digestion (AD) mediated by novel microbial consortia is widely used to convert FW to clean energy. Despite of the considerable progress on food waste and FWAD optimization condition in recent years, a comprehensive and predictive understanding of FWAD microbial consortia is absent and therefore represents a major research challenge in FWAD. The review begins with a global view on the FWAD status and is followed by an overview of the role of AD key conditions' association with microbial community variation during the three main energy substances (hydrogen, organic acids, and methane) production by FWAD. The following topic is the historical understanding of the FWAD microorganism through the development of molecular biotechnology, from classic strain isolation to low-throughput sequencing technologies, to high-throughput sequencing technologies, and to the combination of high-throughput sequencing and isotope tracing. Finally, the integration of multi-omics for better understanding of the microbial community activity and the synthetic biology for the manipulation of the functioning microbial consortia during the FWAD process are proposed. Understanding microbial consortia in FWAD helps us to better manage the global renewable energy source.
Topics: Anaerobiosis; Bioreactors; Food; Microbial Consortia; Refuse Disposal
PubMed: 35954875
DOI: 10.3390/ijerph19159519 -
Molecular Biology and Evolution May 2021The transition of free-living organisms to parasitic organisms is a mysterious process that occurs in all major eukaryotic lineages. Parasites display seemingly unique... (Comparative Study)
Comparative Study
The transition of free-living organisms to parasitic organisms is a mysterious process that occurs in all major eukaryotic lineages. Parasites display seemingly unique features associated with their pathogenicity; however, it is important to distinguish ancestral preconditions to parasitism from truly new parasite-specific functions. Here, we sequenced the genome and transcriptome of anaerobic free-living Mastigamoeba balamuthi and performed phylogenomic analysis of four related members of the Archamoebae, including Entamoeba histolytica, an important intestinal pathogen of humans. We aimed to trace gene histories throughout the adaptation of the aerobic ancestor of Archamoebae to anaerobiosis and throughout the transition from a free-living to a parasitic lifestyle. These events were associated with massive gene losses that, in parasitic lineages, resulted in a reduction in structural features, complete losses of some metabolic pathways, and a reduction in metabolic complexity. By reconstructing the features of the common ancestor of Archamoebae, we estimated preconditions for the evolution of parasitism in this lineage. The ancestor could apparently form chitinous cysts, possessed proteolytic enzyme machinery, compartmentalized the sulfate activation pathway in mitochondrion-related organelles, and possessed the components for anaerobic energy metabolism. After the split of Entamoebidae, this lineage gained genes encoding surface membrane proteins that are involved in host-parasite interactions. In contrast, gene gains identified in the M. balamuthi lineage were predominantly associated with polysaccharide catabolic processes. A phylogenetic analysis of acquired genes suggested an essential role of lateral gene transfer in parasite evolution (Entamoeba) and in adaptation to anaerobic aquatic sediments (Mastigamoeba).
Topics: Adaptation, Biological; Anaerobiosis; Animals; Archamoebae; Biological Evolution; Entamoeba histolytica; Gene Transfer, Horizontal; Genome Size; Genome, Protozoan; Parasites; Transcriptome
PubMed: 33528570
DOI: 10.1093/molbev/msab020 -
Deutsches Arzteblatt International Nov 2019
Topics: Anaerobiosis; Comorbidity; Humans; Irritable Bowel Syndrome; Prevalence
PubMed: 31774055
DOI: 10.3238/arztebl.2019.0755a -
Sheng Wu Gong Cheng Xue Bao = Chinese... Dec 2022Anaerobic digestion is another important anaerobic catabolism pathway besides lactic acid and ethanol fermentation, which is of great significance for recycling...
Anaerobic digestion is another important anaerobic catabolism pathway besides lactic acid and ethanol fermentation, which is of great significance for recycling resources, maintaining the ecological balance, optimizing the energy structure, alleviating the energy crisis, and promoting the implementation of the "Carbon Peaking and Carbon Neutrality" strategy. However, such an important metabolic process has not been involved in the current textbooks and teaching of biochemistry courses, making the teaching system incomplete. The anaerobic digestion process involves many reactions and complex metabolic pathways. In order to improve the students' understanding to this process, we created a full chart of the whole anaerobic digestion process based on systemic literature review and integrated it into the classroom teaching through the BOPPPS teaching mode. It was found that the classroom teaching assisted by this metabolic chart could help students establish the structural framework of the anaerobic digestion process and enrich the knowledge system of metabolism, achieving a good teaching effect. This paper introduces the content of the metabolic pathways of anaerobic digestion and the design of the teaching process, which would facilitate the teaching reforms and perfection of textbooks for related courses, such as Biochemistry, Environmental Engineering Microbiology and New Energy Engineering.
Topics: Humans; Anaerobiosis; Biochemistry; Students; Metabolic Networks and Pathways; Fermentation
PubMed: 36593209
DOI: 10.13345/j.cjb.220305 -
Journal of Applied Oral Science :... 2023Microcosm biofilms can reproduce the complexity of a dental biofilm. However, different forms of cultivation have been used. The impact of the culture atmosphere on the...
OBJECTIVE
Microcosm biofilms can reproduce the complexity of a dental biofilm. However, different forms of cultivation have been used. The impact of the culture atmosphere on the development of microcosm biofilms and their potential to cause tooth demineralization has not yet been deeply studied. This study analyzes the effects of three experimental cultivation models (microaerophile vs. anaerobiosis vs. experimental mixed) on the colony-forming units (CFU) of the cariogenic microorganisms and tooth demineralization.
METHODOLOGY
90 bovine enamel and 90 dentin specimens were distributed into different atmospheres: 1) microaerophilia (5 days, 5% CO2); 2) anaerobiosis (5 days, jar); 3) mixed (2 days microaerophilia and 3 days anaerobiosis), which were treated with 0.12% chlorhexidine (positive control - CHX) or Phosphate-Buffered Saline (negative control - PBS) (n=15). Human saliva and McBain's saliva containing 0.2% sucrose were used for microcosm biofilm formation, for 5 days. From the second day to the end of the experiment, the specimens were treated with CHX or PBS (1x1 min/day). Colony-forming units (CFU) were counted, and tooth demineralization was analyzed using transverse microradiography (TMR). Data were subjected to two-way ANOVA and Tukey's or Sidak's test (p<0.05).
RESULTS
CHX was able to reduce total microorganism's CFU compared to PBS (differences of 0.3-1.48 log10 CFU/mL), except for anaerobiosis and microaerophilia in enamel and dentin biofilm, respectively. In the case of dentin, no effect of CHX on Lactobacillus spp. was observed. CHX significantly reduced enamel demineralization compared to PBS (78% and 22% reductions for enamel and dentin, respectively). Enamel mineral loss did not differ when compared with the other atmospheres; however, the enamel lesion depth was greater under anaerobiosis. Dentin mineral loss was lower under anaerobiosis when compared with the other atmospheres.
CONCLUSION
The type of atmosphere has, in general, little influence on the cariogenic ability of the microcosm biofilm.
Topics: Animals; Cattle; Humans; Anaerobiosis; Biofilms; Dental Caries; Minerals; Streptococcus mutans; Tooth Demineralization
PubMed: 37283356
DOI: 10.1590/1678-7757-2022-0445 -
Environmental Pollution (Barking, Essex... Oct 2022Tetrabromobisphenol A (TBBPA) is the most used flame retardant worldwide and has become a threat to aquatic ecosystems. Previous research into the degradation of this...
Tetrabromobisphenol A (TBBPA) is the most used flame retardant worldwide and has become a threat to aquatic ecosystems. Previous research into the degradation of this micropollutant in anaerobic bioreactors has suggested several identities of putative TBBPA degraders. However, the organisms actively degrading TBBPA under in situ conditions have so far not been identified. Protein-stable isotope probing (protein-SIP) has become a cutting-edge technique in microbial ecology for enabling the link between identity and function under in situ conditions. Therefore, it was hypothesized that combining protein-based stable isotope probing with metagenomics could be used to identify and provide genomic insight into the TBBPA-degrading organisms. The identified C-labelled peptides were found to belong to organisms affiliated to Phytobacter, Clostridium, Sporolactobacillus, and Klebsilla genera. The functional classification of identified labelled peptides revealed that TBBPA is not only transformed by cometabolic reactions, but also assimilated into the biomass. By application of the proteogenomics with labelled micropollutants (protein-SIP) and metagenome-assembled genomes, it was possible to extend the current perspective of the diversity of TBBPA degraders in wastewater and predict putative TBBPA degradation pathways. The study provides a link to the active TBBPA degraders and which organisms to favor for optimized biodegradation.
Topics: Anaerobiosis; Biodegradation, Environmental; Bioreactors; Ecosystem; Isotopes; Polybrominated Biphenyls; Proteogenomics
PubMed: 35872283
DOI: 10.1016/j.envpol.2022.119786 -
Cancer Immunology, Immunotherapy : CII Dec 2023Even in present-day times, cancer is one of the most fatal diseases. People are overwhelmed by pricey chemotherapy, immunotherapy, and other costly cancer therapies in... (Review)
Review
INTRODUCTION
Even in present-day times, cancer is one of the most fatal diseases. People are overwhelmed by pricey chemotherapy, immunotherapy, and other costly cancer therapies in poor and middle-income countries. Cancer cells grow under anaerobic and hypoxic conditions. Pyruvate is the final product of the anaerobic glycolysis pathway, and many cancer cells utilize pyruvate for their growth and development. The anaerobic microbiome produces many anti-cancer substances that can act as anti-tumor agents and are both feasible and of low cost. There are different mechanisms of action of the anaerobic microbiome, such as the production of short-chain fatty acids (SCFAs), and competition for the anaerobic environment includes the metabolic product pyruvate to form lactic acid for energy.
KEY FINDINGS
In this review, we have summarized the role of the metabolic approach of the anaerobic human microbiome in cancer prevention and treatment by interfering with cancer metabolite pyruvate. SCFAs possess decisive outcomes in condoning almost all the hallmarks of cancer and helping the spread of cancer to other body parts. Studies have demonstrated the impact and significance of using SCFA, which results from anaerobic bacteria, as an anti-cancer agent. Anaerobic bacteria-based cancer therapy has become a promising approach to treat cancer using obligate and facultative anaerobic bacteria because of their ability to penetrate and increase in an acidic hypoxic environment.
SIGNIFICANCE
This review attempts to provide the interconnection of cancer metabolism and anaerobic microbiome metabolism with a focus on pyruvate metabolism to understand and design unique anaerobic microbiota-based therapy for cancer patients.
Topics: Humans; Anaerobiosis; Microbiota; Neoplasms; Pyruvates; Bacteria, Anaerobic
PubMed: 37882845
DOI: 10.1007/s00262-023-03551-y -
Scientific Reports Aug 2021The effect of nanobubbles on anaerobic growth and metabolism of Pseudomonas aeruginosa was investigated. P. aeruginosa grew earlier in the culture medium containing...
The effect of nanobubbles on anaerobic growth and metabolism of Pseudomonas aeruginosa was investigated. P. aeruginosa grew earlier in the culture medium containing nanobubbles and the bacterial cell concentration in that culture medium was increased a few times higher compared to the medium without nanobubbles under anaerobic condition. Both gas and protein, which are the metabolites of P. aeruginosa, were remarkably produced in the culture medium containing nanobubbles whereas those metabolites were little detected in the medium without nanobubbles, indicating nanobubbles activated anaerobic growth and metabolism of P. aeruginosa. The carbon dioxide nanobubbles came to be positively charged by adsorbing cations and delivered ferrous ions, one of the trace essential elements for bacterial growth, to the microbial cells, which activated the growth and metabolism of P. aeruginosa. The oxygen nanobubbles activated the activities of P. aeruginosa as an oxygen source.
Topics: Anaerobiosis; Culture Media; Nanoparticles; Pseudomonas aeruginosa; Sterilization
PubMed: 34413439
DOI: 10.1038/s41598-021-96503-4 -
Bioresource Technology Jun 2022The unprecedented demand for seafood has resulted in land-based recirculating aquaculture systems (RAS), a highly intensive but sustainable fish farming method. However,... (Review)
Review
The unprecedented demand for seafood has resulted in land-based recirculating aquaculture systems (RAS), a highly intensive but sustainable fish farming method. However, intensification also results in concentrated waste streams of fecal matter and uneaten feed. Harvesting and processing vast quantities of fish also leads to the production of byproducts, further creating disposal challenges for fish farms. Recent research indicates that anaerobic digestion (AD), often used for waste treatment in agricultural and wastewater industries, may provide a viable solution. Limited research on AD of freshwater, brackish, and saline wastewater from RAS facilities and co-digestion of seafood byproducts has shown promising results but with considerable operational and process stability issues. This review discusses challenges to AD due to low solid concentrations, salinity, low carbon/nitrogen ratio, and high lipid content in the waste streams. Opportunities for recovering valuable biomolecules and nutrients through microbial treatment, aquaponics, microalgae, and polyhydroxyalkanoate production are also discussed.
Topics: Anaerobiosis; Aquaculture; Nitrogen; Seafood; Wastewater
PubMed: 35413421
DOI: 10.1016/j.biortech.2022.127144 -
Journal of Clinical Microbiology May 2023
Review
Topics: Humans; Anaerobiosis; Staining and Labeling; Coloring Agents; Bacteria, Anaerobic
PubMed: 37219093
DOI: 10.1128/jcm.00150-22