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Cells Aug 2022This paper analyses the impact of the diatomaceous earth/peat (DEP; 3:1) microbial carrier on changes in the bacterial microbiome and the development of biofilm in the...
This paper analyses the impact of the diatomaceous earth/peat (DEP; 3:1) microbial carrier on changes in the bacterial microbiome and the development of biofilm in the anaerobic digestion (AD) of confectionery waste, combined with digested sewage sludge as inoculum. The physicochemical properties of the carrier material are presented, with particular focus on its morphological and dispersion characteristics, as well as adsorption and thermal properties. In this respect, the DEP system was found to be a suitable carrier for both mesophilic and thermophilic AD. The evaluation of quantitative and qualitative changes in the genetic diversity of bacterial communities, carried out using next-generation sequencing (NGS), showed that the material has a modifying effect on the bacterial microbiome. While Actinobacteria was the most abundant cluster in the WF-control sample (WF-waste wafers), Firmicutes was the dominant cluster in the digested samples without the carrier (WF-dig.; dig.-digested) and with the carrier (WF + DEP). The same was true for the count of Proteobacteria, which decreased twofold during biodegradation in favor of Synergistetes. The cluster was identified as the most abundant genus in the two samples, particularly in WF + DEP. This information was supplemented by observations of morphological features of microorganisms carried out using fluorescence microscopy. The biodegradation process itself had a significant impact on changes in the microbiome of samples taken from anaerobic bioreactors, reducing its biodiversity. As demonstrated by the results of this innovative method, namely the BioFlux microfluidic flow system, the decrease in the number of taxa in the digested samples and the addition of DEP contributed to the microbial adhesion in the microfluidic system and the formation of a stable biofilm.
Topics: Anaerobiosis; Bacteria; Bioreactors; Diatomaceous Earth; Genetic Variation; Sewage; Soil
PubMed: 36010646
DOI: 10.3390/cells11162571 -
Scientific Reports Mar 2018The evolutionary causes for generation of nano and microstructured silica by photosynthetic algae are not yet deciphered. Diatoms are single photosynthetic algal cells...
The evolutionary causes for generation of nano and microstructured silica by photosynthetic algae are not yet deciphered. Diatoms are single photosynthetic algal cells populating the oceans and waters around the globe. They generate a considerable fraction (20-30%) of all oxygen from photosynthesis, and 45% of total primary production of organic material in the sea. There are more than 100,000 species of diatoms, classified by the shape of the glass cage in which they live, and which they build during algal growth. These glass structures have accumulated for the last 100 million of years, and left rich deposits of nano/microstructured silicon oxide in the form of diatomaceous earth around the globe. Here we show that reflection of ultraviolet light by nanostructured silica can protect the deoxyribonucleic acid (DNA) in the algal cells, and that this may be an evolutionary cause for the formation of glass cages.
Topics: Biological Evolution; DNA; DNA Damage; Diatoms; Photosynthesis; Silicon Dioxide; Ultraviolet Rays
PubMed: 29572445
DOI: 10.1038/s41598-018-21810-2 -
Molecules (Basel, Switzerland) Nov 2022Frequent monitoring of sea food, especially shellfish samples, for the presence of biotoxins serves not only as a valuable strategy to mitigate adulteration associated...
Frequent monitoring of sea food, especially shellfish samples, for the presence of biotoxins serves not only as a valuable strategy to mitigate adulteration associated health risks, but could also be used to develop predictive models to understand algal explosion and toxin trends. Periodic toxin assessment is often restricted due to poor sensitivity, multifarious cleaning/extraction protocols and high operational costs of conventional detection methods. Through this work, a simplistic approach to quantitatively assess the presence of a representative marine neurotoxin, Domoic acid (DA), from spiked water and crab meat samples is presented. DA sensing was performed based on surface-enhanced Raman scattering (SERS) using silver nanoparticle enriched diatomaceous earth—a biological photonic crystal material in nature. Distinctive optical features of the quasi-ordered pore patterns in diatom skeleton with sporadic yet uniform functionalization of silver nanoparticles act as excellent SERS substrates with improved DA signals. Different concentrations of DA were tested on the substrates with the lowest detectable concentration being 1 ppm that falls well below the regulatory DA levels in seafood (>20 ppm). All the measurements were rapid and were performed within a measurement time of 1 min. Utilizing the measurement results, a standard calibration curve between SERS signal intensity and DA concentration was developed. The calibration curve was later utilized to predict the DA concentration from spiked Dungeness crab meat samples. SERS based quantitative assessment was further complemented with principal component analysis and partial least square regression studies. The tested methodology aims to bring forth a sensitive yet simple, economical and an extraction free routine to assess biotoxin presence in sea food samples onsite.
Topics: Silver; Metal Nanoparticles; Kainic Acid; Spectrum Analysis, Raman; Seafood
PubMed: 36500455
DOI: 10.3390/molecules27238364 -
Materials (Basel, Switzerland) Oct 2020New composites containing a natural filler made of diatom shells (frustules), permitting the modification of polylactide matrix, were produced by Fused Deposition...
New composites containing a natural filler made of diatom shells (frustules), permitting the modification of polylactide matrix, were produced by Fused Deposition Modelling (3D printing) and were thoroughly examined. Two mesh fractions of the filler were used, one of <40 µm and the other of 40-63 µm, in order to check the effect of the filler particle size on the composite properties. The composites obtained contained diatom shells in the concentrations from 0% to 5% wt. (0-27.5% vol.) and were subjected to rheological analysis. The composites obtained as filaments of 1.75 mm in diameter were used for 3D printing. The printed samples were characterized as to hydrophilic-hydrophobic, thermal and mechanical properties. The functional parameters of the printed objects, e.g., mechanical characteristics, stability on contact with water and water contact angle, were measured. The results revealed differences in the processing behavior of the samples as well as the effect of secondary granulation of the filler on the parameters of the printing and mechanical properties of the composites.
PubMed: 33081398
DOI: 10.3390/ma13204632 -
Alkalinity Regulation and Optimization of Cementitious Materials Used in Ecological Porous Concrete.Materials (Basel, Switzerland) Apr 2024Ecological porous concrete (EPC) is one of the novel formulations of concrete with unique phytogenic properties. However, achieving both low alkalinity and high strength...
Ecological porous concrete (EPC) is one of the novel formulations of concrete with unique phytogenic properties. However, achieving both low alkalinity and high strength in EPC proves challenging due to the inherently high alkalinity of the pore environment, which hinders the growth of the plant and affects its ecological benefits significantly. This research investigated the utilization of 15 types of chemical admixtures and diatomaceous earth as alkali-reducing agents to optimize the properties of silicate cementitious materials for the applications of EPC. To identify the most effective agents, the pH value and compressive strength of the cement paste were adopted as the screening criteria for the selection of the essential alkali-reducing ingredients. Subsequently, a composite approach combining chemical admixtures and DE was employed to explore the synergistic effects on the pH and strength of silicate cementitious materials. The results revealed that a combination of 8% DE, 5% oxalic acid, and 5% iron sulfate functioned effectively and resulted in desirable performance for the concrete. This synergistic blend effectively consumed a large amount of Ca(OH), reducing the pH of cement paste to 10.48 within 3 days. Furthermore, the hydration reaction generated C-S-H with a low Ca/Si ratio, leading to a remarkable increase in the compressive strength of the concrete, reaching 89.7 MPa after 56 days. This composite approach ensured both low alkalinity and high strength in silicate cementitious materials, providing a theoretical basis for the application and promotion of EPC in the ecological field.
PubMed: 38673275
DOI: 10.3390/ma17081918 -
Asian Pacific Journal of Allergy and... Mar 2015Tamm-Horsfall glycoprotein (THP) and uromodulin are the most abundant glycoproteins in non-pregnant women's/men's and pregnant women's urine, respectively. However, the...
BACKGROUND
Tamm-Horsfall glycoprotein (THP) and uromodulin are the most abundant glycoproteins in non-pregnant women's/men's and pregnant women's urine, respectively. However, the bioactivities of these glycoproteins are still unclear.
OBJECTIVE
To evaluate the immunomodulatory properties of THP and uromodulin on human peripheral blood mononuclear cells (PBMC) METHODS: THP and uromodulin isolated with diatomaceous earth filtration were subjected to several bioassays, such as MTS viability assay, immunophenotyping and cytokine analysis.
RESULTS
MTS viability assay and immunophenotyping analysis showed that uromodulin has greater inhibitory activities in suppressing PBMC viability and the percentage of CD4⁺ T helper cells and CD8⁺ cytotoxic T cells, compared to that of THP. In cytokine analysis, THP tended to induce pro-inflammatory cytokines such as IL-1β, TNF and Th1 cytokine IFN-γ; while uromodulin only induced IL-1β and suppressed both Th1 cytokine IFN-γ and Th2 cytokine IL-10.
CONCLUSION
These results demonstrate that uromodulin has greater immunosuppressive activities and lower inductive property in relation to activation of immune cells, which provides a more tolerant environment for the developing fetus.
Topics: Adult; Female; Humans; Immunologic Factors; Immunophenotyping; Interferon-gamma; Interleukin-10; Interleukin-1beta; Lymphocyte Activation; Male; Pregnancy; Primary Cell Culture; T-Lymphocytes, Cytotoxic; T-Lymphocytes, Helper-Inducer; Th1-Th2 Balance; Tumor Necrosis Factor-alpha; Uromodulin
PubMed: 25840631
DOI: 10.12932/AP0463.33.1.2015 -
RSC Advances Aug 2019Molecular based diagnostic methods rely on the amplification of pathogen DNA but naked eye visualization of results is still challenging. We present here a simple and...
Molecular based diagnostic methods rely on the amplification of pathogen DNA but naked eye visualization of results is still challenging. We present here a simple and highly reliable DNA amplification readout system for naked eye detection of isothermally or PCR amplified DNA in less than 30 seconds. This system utilizes spermine to precipitate DNA amplicons and initiate bridging flocculation of a mix of charcoal and diatomaceous earth particles in suspension. In the absence of amplification, the charcoal particles remain suspended resulting in a black, non-transparent colloid solution while positive samples in which DNA amplification has occurred can be identified within seconds as the particles flocculate and settle leaving a transparent liquid phase. We have coupled this method with our rapid dipstick DNA purification method and isothermal DNA amplification to create a simple four-step diagnostic system that can be preassembled to reduce unnecessary manipulation in the field. The method's simplicity, low cost, minimal equipment and clear presence/absence readout makes it ideal for rapid diagnostic testing in the laboratory and in situations where users have limited technical training or resources including high school science classes and field-based research.
PubMed: 35527854
DOI: 10.1039/c9ra04725e -
Biosensors Feb 2023(MTB) is a communicable disease and still remains a threat to common health. Thus, early diagnosis and treatment are required to prevent the spread of infection....
(MTB) is a communicable disease and still remains a threat to common health. Thus, early diagnosis and treatment are required to prevent the spread of infection. Despite the recent advances in molecular diagnostic systems, the commonly used MTB diagnostic tools are laboratory-based assays, such as mycobacterial culture, MTB PCR, and Xpert MTB/RIF. To address this limitation, point-of-care testing (POCT)-based molecular diagnostic technologies capable of sensitive and accurate detection even in environments with limited sources are needed. In this study, we propose simple tuberculosis (TB) molecular diagnostic assay by combining sample preparation and DNA-detection steps. The sample preparation is performed using a syringe filter with amine-functionalized diatomaceous earth and homobifunctional imidoester. Subsequently, the target DNA is detected by quantitative PCR (polymerase chain reaction). The results can be obtained within 2 h from samples with large volumes, without any additional instruments. The limit of detection of this system is 10 times higher than those of conventional PCR assays. We validated the clinical utility of the proposed method in 88 sputum samples obtained from four hospitals in the Republic of Korea. Overall, the sensitivity of this system was superior to those of other assays. Therefore, the proposed system can be useful for MTB diagnosis in limited-resource settings.
Topics: Humans; Mycobacterium tuberculosis; Tuberculosis, Pulmonary; Pathology, Molecular; Sensitivity and Specificity; Sputum; Molecular Diagnostic Techniques
PubMed: 36832025
DOI: 10.3390/bios13020259 -
Evidence-based Complementary and... 2019Food industries typically use as concentrated (100× to 200×) and dried powders in their final products. These powders are obtained by extrusion of inner leaf gel...
Food industries typically use as concentrated (100× to 200×) and dried powders in their final products. These powders are obtained by extrusion of inner leaf gel (ILG) or whole leaf (WLP); the juice is filtered through diatomaceous earth and activated carbon before spray drying at temperatures below 70 °C. In another process, inner leaf gel was dried at ~80 °C and mashed to a powder rich in high molecular weight fibres and soluble polysaccharides (ILF). In contrast to ILG and WLP, the ILF sample was cytotoxic for the human intestinal cell line Caco-2 (CC = 1 g/l), even at concentrations below the recommended dose for human consumption. At lower concentrations (250 mg/l) with LPS challenged macrophage-like THP-1 cells decreased by 40% the release of the anti-inflammatory cytokine IL-10, whereas the release of the proinflammatory cytokine IL-1 increased by 35% (compared to untreated but challenged macrophage-like THP-1 cells). Unexpectedly, under the same conditions, the less cytotoxic ILG and WLP, both samples with a lower fibre content, significantly increased (up to 2.4 times) the release of IL-10, while the concentration of IL-1 remained unaltered and of TNF decreased by 35%. Even more interesting is that a treatment of the ILF sample with activated carbon reduced its cytotoxicity and increased the IL-10 release (3.1 times). Based on these results, we suggest applying an activated carbon treatment on -starting products, which have high fibre content and have received high temperature treatment, in order to reduce their cytotoxicity and improve their immunomodulatory properties.
PubMed: 30941196
DOI: 10.1155/2019/5961742 -
Materials (Basel, Switzerland) Sep 2022The poly(lactic acid) (PLA) biodegradable polymer, as well as natural, siliceous reinforcement in the form of diatomaceous earth, fit perfectly into the circular economy...
The poly(lactic acid) (PLA) biodegradable polymer, as well as natural, siliceous reinforcement in the form of diatomaceous earth, fit perfectly into the circular economy trend. In this study, various kinds of commercial PLA have been reinforced with diatomaceous earth (DE) to prepare biodegradable composites via the extrusion process. The structure of the manufactured composites as well as adhesion between the matrix and the filler were investigated using scanning electron microscopy (SEM). Differential scanning calorimetry (DSC) analyses were carried out to determine crystallinity of PLA matrix as function of DE additions. Additionally, the effect of the ceramic-based reinforcement on the mechanical properties (Young's modulus, elongation to failure, ultimate tensile strength) of PLA has been investigated. The results are discussed in terms of possible applications of PLA + DE composites.
PubMed: 36143522
DOI: 10.3390/ma15186210