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Frontiers in Chemistry 2022As a typical microscopic imaging technology, the emergence of the microscope has accelerated the pace of human exploration of the micro world. With the development of... (Review)
Review
As a typical microscopic imaging technology, the emergence of the microscope has accelerated the pace of human exploration of the micro world. With the development of science and technology, microscopes have developed from the optical microscopes at the time of their invention to electron microscopes and even atomic force microscopes. The resolution has steadily improved, allowing humans to expand the field of research from the initial animal and plant tissues to microorganisms such as bacteria, and even down to the nanolevel. The microscope is now widely used in life science, material science, geological research, and other fields. It can be said that the development of microscopes also promotes the development of micro- and nanotechnology. It is foreseeable that microscopes will play a significant part in the exploration of the microworld for a long time to come. The development of microscope technology is the focus of this study, which summarized the properties of numerous microscopes and discussed their applications in micro and nanotechnology. At the same time, the application of microscopic imaging technology in micro- and nanofields was investigated based on the properties of various microscopes.
PubMed: 35864864
DOI: 10.3389/fchem.2022.931169 -
Archives of Plastic Surgery Jan 2023Three-dimensional (3D) video exoscopes are high-magnification stereo cameras that project onto monitors mounted in the operating room, viewable from different angles....
Three-dimensional (3D) video exoscopes are high-magnification stereo cameras that project onto monitors mounted in the operating room, viewable from different angles. Outside of plastic surgery, exoscopes have been shown to successfully improve the ergonomics of microsurgery, though sometimes with prolonged operating times. We compare a single surgeon's early experience performing free flap procedures from 2020 to 2021 using either a binocular microscope or a 3D video exoscope. Ten procedures were performed with the standard operating microscope and 8 procedures with the 3D exoscope. The microsurgeon, having minimal prior experience using an exoscope, reported less neck discomfort following the free flap procedures performed with the exoscope compared with the binocular surgical microscope. Total average operating time was comparable between the standard surgical microscope and the 3D exoscope (13.7 vs. 13.4 hours, = 0.34). Our early experience using a 3D exoscope in place of a standard optical microscope demonstrated that the exoscope shows promise, offering an ergonomic alternative during microvascular reconstruction without increasing overall operating times. Future studies will compare free flap ischemia time between cases performed using the exoscope and the conventional binocular microscope. Medical Subject Headings authorized following words: free tissue flaps; operating rooms; ergonomics; microsurgery.
PubMed: 36755658
DOI: 10.1055/s-0042-1758768 -
ArXiv Oct 2023Scanning-probe and wide-field magnetic microscopes based on Nitrogen-Vacancy (NV) centers in diamond have enabled remarkable advances in the study of biology and...
Scanning-probe and wide-field magnetic microscopes based on Nitrogen-Vacancy (NV) centers in diamond have enabled remarkable advances in the study of biology and materials, but each method has drawbacks. Here, we implement an alternative method for nanoscale magnetic microscopy based on optical control of the charge state of NV centers in a dense layer near the diamond surface. By combining a donut-beam super-resolution technique with optically detected magnetic resonance spectroscopy, we imaged the magnetic fields produced by single 30-nm iron-oxide nanoparticles. The magnetic microscope has a lateral spatial resolution of ~100 nm, and it resolves the individual magnetic dipole features from clusters of nanoparticles with interparticle spacings down to ~190 nm. The magnetic feature amplitudes are more than an order of magnitude larger than those obtained by confocal magnetic microscopy due to the smaller characteristic NV-nanoparticle distance within nearby sensing voxels. We analyze the magnetic point-spread function and sensitivity as a function of the microscope's spatial resolution and identify sources of background fluorescence that limit the present performance, including diamond second-order Raman emission and imperfect NV charge-state control. Our method, which uses less than 10 mW laser power and can be parallelized by patterned illumination, introduces a new format for nanoscale magnetic imaging.
PubMed: 37873018
DOI: No ID Found -
Computational and Structural... 2022Microscopic images are widely used in basic biomedical research, disease diagnosis and medical discovery. Obtaining high-quality in-focus microscopy images has been a...
MOTIVATION
Microscopic images are widely used in basic biomedical research, disease diagnosis and medical discovery. Obtaining high-quality in-focus microscopy images has been a cornerstone of the microscopy. However, images obtained by microscopes are often out-of-focus, resulting in poor performance in research and diagnosis.
RESULTS
To solve the out-of-focus issue in microscopy, we developed a Cycle Generative Adversarial Network (CycleGAN) based model and a multi-component weighted loss function. We train and test our network in two self-collected datasets, namely Leishmania parasite dataset captured by a bright-field microscope, and bovine pulmonary artery endothelial cells (BPAEC) captured by a confocal fluorescence microscope. In comparison to other GAN-based deblurring methods, the proposed model reached state-of-the-art performance in correction. Another publicly available dataset, human cells dataset from the Broad Bioimage Benchmark Collection is used for evaluating the generalization abilities of the model. Our model showed excellent generalization capability, which could transfer to different types of microscopic image datasets.
AVAILABILITY AND IMPLEMENTATION
Code and dataset are publicly available at: https://github.com/jiangdat/COMI.
PubMed: 35521557
DOI: 10.1016/j.csbj.2022.04.003 -
Nature Methods Jul 2022Cameras are a crucial part of microscopes and are also built into many kinds of instruments. To make their output comparable takes standards.
Cameras are a crucial part of microscopes and are also built into many kinds of instruments. To make their output comparable takes standards.
Topics: Microscopy; Photography; Reference Standards
PubMed: 35750961
DOI: 10.1038/s41592-022-01545-9 -
Scientific Reports Feb 2017State-of-the-art high-throughput microscopes are now capable of recording image data at a phenomenal rate, imaging entire microscope slides in minutes. In this paper we...
State-of-the-art high-throughput microscopes are now capable of recording image data at a phenomenal rate, imaging entire microscope slides in minutes. In this paper we investigate how a large image set can be used to perform automated cell classification and denoising. To this end, we acquire an image library consisting of over one quarter-million white blood cell (WBC) nuclei together with CD15/CD16 protein expression for each cell. We show that the WBC nucleus images alone can be used to replicate CD expression-based gating, even in the presence of significant imaging noise. We also demonstrate that accurate estimates of white blood cell images can be recovered from extremely noisy images by comparing with a reference dictionary. This has implications for dose-limited imaging when samples belong to a highly restricted class such as a well-studied cell type. Furthermore, large image libraries may endow microscopes with capabilities beyond their hardware specifications in terms of sensitivity and resolution. We call for researchers to crowd source large image libraries of common cell lines to explore this possibility.
Topics: Blood Cells; Humans; Image Cytometry; Image Processing, Computer-Assisted; Microscopy
PubMed: 28225061
DOI: 10.1038/srep43148 -
Pathologica Dec 2023Counting stuff under the microscope is part of the duties of a surgical pathologist. Many textbooks and articles still report the surface area as the number of... (Review)
Review
Counting stuff under the microscope is part of the duties of a surgical pathologist. Many textbooks and articles still report the surface area as the number of high-power fields (HPFs) counted. This is bad, since the area displayed by an HPF varies between two microscopes. It is therefore necessary to express the surface as mm. This is a how to guide written for the resident who has to measure the HPF of the microscope for the first time. The Resident can either calibrate the microscope with a stage micrometer slide (a small ruler on a glass slide) or compute the surface area of the HPF using the numbers on the eyepiece and the magnification objective. for "10X/22" eyepiece and a "40X" objective, the diameter of the HPF is 22/40 = 0.55 (if no other magnification is present), and the surface is 0.238 mm. The young resident might then ask: "How far off-target was I when I counted the number of HPFs that the chief resident declared to be correct?" Probably not that much: although legitimate in principle and correct in math, the size of the problem is often overstated since microscopes are not that different after all and because pathology is not just about counting.
Topics: Microscopy; Pathology
PubMed: 38180138
DOI: 10.32074/1591-951X-900 -
ArXiv Jul 2023Microscopes are essential for the biomechanical and hydrodynamical investigation of small aquatic organisms. We report a do-it-yourself microscope (GLUBscope) that...
Microscopes are essential for the biomechanical and hydrodynamical investigation of small aquatic organisms. We report a do-it-yourself microscope (GLUBscope) that enables the visualization of organisms from two orthogonal imaging planes - top and side views. Compared to conventional imaging systems, this approach provides a comprehensive visualization strategy of organisms, which could have complex shapes and morphologies. The microscope was constructed by combining custom 3D-printed parts and off-the-shelf components. The system is designed for modularity and reconfigurability. Open-source design files and build instructions are provided in this report. Additionally, proof-of-use experiments (particularly with Hydra) and other organisms that combine the GLUBscope with an analysis pipeline were demonstrated to highlight the system's utility. Beyond the applications demonstrated, the system can be used or modified for various imaging applications.
PubMed: 37547659
DOI: No ID Found -
Journal of Microscopy Nov 2022Adaptive optics is being applied widely to a range of microscopies in order to improve imaging quality in the presence of specimen-induced aberrations. We present here...
Adaptive optics is being applied widely to a range of microscopies in order to improve imaging quality in the presence of specimen-induced aberrations. We present here the first implementation of wavefront-sensorless adaptive optics for a laser-free, aperture correlation, spinning disk microscope. This widefield method provides confocal-like optical sectioning through use of a patterned disk in the illumination and detection paths. Like other high-resolution microscopes, its operation is compromised by aberrations due to refractive index mismatch and variations within the specimen. Correction of such aberrations shows improved signal level, contrast and resolution.
Topics: Optics and Photonics; Microscopy; Refractometry; Lasers
PubMed: 33128278
DOI: 10.1111/jmi.12976 -
Micromachines May 2022A fluorescence microscope is one of the most important tools for biomedical research and laboratory diagnosis. However, its high cost and bulky size hinder the...
A fluorescence microscope is one of the most important tools for biomedical research and laboratory diagnosis. However, its high cost and bulky size hinder the application of laboratory microscopes in space-limited and low-resource applications. Here, in this work, we proposed a portable and cost-effective fluorescence microscope. Assembled from a set of 3D print components and a webcam, it consists of a three-degree-of-freedom sliding platform and a microscopic imaging system. The microscope is capable of bright-field and fluorescence imaging with micron-level resolution. The resolution and field of view of the microscope were evaluated. Compared with a laboratory-grade inverted fluorescence microscope, the portable microscope shows satisfactory performance, both in the bright-field and fluorescence mode. From the configurations of local resources, the microscope costs around USD 100 to assemble. To demonstrate the capability of the portable fluorescence microscope, we proposed a quantitative polymerase chain reaction experiment for meat product authenticating applications. The portable and low-cost microscope platform demonstrates the benefits in space-constrained environments and shows high potential in telemedicine, point-of-care testing, and more.
PubMed: 35744483
DOI: 10.3390/mi13060869