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Memorias Do Instituto Oswaldo Cruz 2023
Topics: Peer Review; Publishing
PubMed: 37377250
DOI: 10.1590/0074-02760230001 -
Communications Biology 2019The theme of this year's Peer Review Week, Quality in Peer Review, reflects both the necessity of peer review and the growing uncertainty about its role in scholarly...
The theme of this year's Peer Review Week, Quality in Peer Review, reflects both the necessity of peer review and the growing uncertainty about its role in scholarly publishing. We support peer review that aims to improve manuscripts through critical evaluation before publication.
Topics: Humans; Peer Review; Scholarly Communication
PubMed: 31552304
DOI: 10.1038/s42003-019-0603-3 -
Biophysical Journal Aug 2016
Topics: Peer Review; Periodicals as Topic
PubMed: 27508451
DOI: 10.1016/j.bpj.2016.06.035 -
ELife Oct 2017Five years after eLife published its first papers, we reflect on our consultative approach to peer review, the challenges of reproducibility, and the need to reform how...
Five years after eLife published its first papers, we reflect on our consultative approach to peer review, the challenges of reproducibility, and the need to reform how published research is assessed.
Topics: Editorial Policies; Peer Review, Research; Periodicals as Topic; Reproducibility of Results
PubMed: 29021081
DOI: 10.7554/eLife.31697 -
Canadian Family Physician Medecin de... Sep 2022
Topics: Humans; Peer Group; Peer Review
PubMed: 36100392
DOI: 10.46747/cfp.6809632 -
Cell Systems May 2021Two fundamental aims that emerge when analyzing single-cell RNA-seq data are identifying which genes vary in an informative manner and determining how these genes...
Two fundamental aims that emerge when analyzing single-cell RNA-seq data are identifying which genes vary in an informative manner and determining how these genes organize into modules. Here, we propose a general approach to these problems, called "Hotspot," that operates directly on a given metric of cell-cell similarity, allowing for its integration with any method (linear or non-linear) for identifying the primary axes of transcriptional variation between cells. In addition, we show that when using multimodal data, Hotspot can be used to identify genes whose expression reflects alternative notions of similarity between cells, such as physical proximity in a tissue or clonal relatedness in a cell lineage tree. In this manner, we demonstrate that while Hotspot is capable of identifying genes that reflect nuanced transcriptional variability between T helper cells, it can also identify spatially dependent patterns of gene expression in the cerebellum as well as developmentally heritable expression programs during embryogenesis. Hotspot is implemented as an open-source Python package and is available for use at http://www.github.com/yoseflab/hotspot. A record of this paper's transparent peer review process is included in the supplemental information.
Topics: Gene Regulatory Networks; Genomics; Peer Review
PubMed: 33951459
DOI: 10.1016/j.cels.2021.04.005 -
Microbiology (Reading, England) May 2019
Topics: Online Systems; Peer Review; Printing; Publications
PubMed: 30938669
DOI: 10.1099/mic.0.000785 -
Indian Journal of Dermatology,... 2020
Topics: Fees and Charges; Humans; Peer Review; Periodicals as Topic
PubMed: 31975699
DOI: 10.4103/ijdvl.IJDVL_22_20 -
ELife Nov 2021Concealing the identity of the principal investigator only partially closes the success gap between white and African American or Black researchers in NIH grant...
Concealing the identity of the principal investigator only partially closes the success gap between white and African American or Black researchers in NIH grant applications.
Topics: Achievement; Black People; Humans; Peer Review; Research Personnel
PubMed: 34816796
DOI: 10.7554/eLife.74744 -
Indian Journal of Dermatology,...
Topics: Humans; Peer Review
PubMed: 38219023
DOI: 10.25259/IJDVL_1356_2023