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Molecular Plant-microbe Interactions :... Oct 2018Brown stem rot, caused by the fungus Phialophora gregata, reduces soybean yield by up to 38%. Although three dominant resistance loci have been identified (Rbs1 to...
Brown stem rot, caused by the fungus Phialophora gregata, reduces soybean yield by up to 38%. Although three dominant resistance loci have been identified (Rbs1 to Rbs3), the gene networks responsible for pathogen recognition and defense remain unknown. Further, identification and characterization of resistant and susceptible germplasm remains difficult. We conducted RNA-Seq of infected and mock-infected leaf, stem, and root tissues of a resistant (PI 437970, Rbs3) and susceptible (Corsoy 79) genotype. Combining historical mapping data with genotype expression differences allowed us to identify a cluster of receptor-like proteins that are candidates for the Rbs3 resistance gene. Reads mapping to the Rbs3 locus were used to identify potential novel single-nucleotide polymorphisms within candidate genes that could improve phenotyping and breeding efficiency. Comparing responses to infection revealed little overlap in differential gene expression between genotypes or tissues. Gene networks associated with defense, DNA replication, and iron homeostasis are hallmarks of resistance to P. gregata. This novel research demonstrates the utility of combining contrasting genotypes, gene expression, and classical genetic studies to characterize complex disease resistance loci.
Topics: Base Sequence; Gene Expression Regulation, Plant; Phialophora; Plant Diseases; Plant Proteins; RNA, Plant; Glycine max
PubMed: 30004290
DOI: 10.1094/MPMI-01-18-0009-R -
PeerJ 2024Conventional biofilters, which rely on bacterial activity, face challenges in eliminating hydrophobic compounds, such as aromatic compounds. This is due to the low... (Comparative Study)
Comparative Study
BACKGROUND
Conventional biofilters, which rely on bacterial activity, face challenges in eliminating hydrophobic compounds, such as aromatic compounds. This is due to the low solubility of these compounds in water, which makes them difficult to absorb by bacterial biofilms. Furthermore, biofilter operational stability is often hampered by acidification and drying out of the filter bed.
METHODS
Two bioreactors, a bacterial biofilter (B-BF) and a fungal-bacterial coupled biofilter (F&B-BF) were inoculated with activated sludge from the secondary sedimentation tank of the Sinopec Yangzi Petrochemical Company wastewater treatment plant located in Nanjing, China. For approximately 6 months of operation, a F&B-BF was more effective than a B-BF in eliminating a gas-phase mixture containing benzene, toluene, ethylbenzene, and -xylene (BTE-X).
RESULTS
After operating for four months, the F&B-BF showed higher removal efficiencies for toluene (T), ethylbenzene (E), benzene (B), and -X (-Xylene), at 96.9%, 92.6%, 83.9%, and 83.8%, respectively, compared to those of the B-BF (90.1%, 78.7%, 64.8%, and 59.3%). The degradation activity order for B-BF and F&B-BF was T > E > B > -X. Similarly, the rates of mineralization for BTE-X in the F&B-BF were 74.9%, 66.5%, 55.3%, and 45.1%, respectively, which were higher than those in the B-BF (56.5%, 50.8%, 43.8%, and 30.5%). Additionally, the F&B-BF (2 days) exhibited faster recovery rates than the B-BF (5 days).
CONCLUSIONS
It was found that a starvation protocol was beneficial for the stable operation of both the B-BF and F&B-BF. Community structure analysis showed that the bacterial genus and the fungal genus were both important in the degradation of BTE-X. The fungal-bacterial consortia can enhance the biofiltration removal of BTE-X vapors.
Topics: Xylenes; Filtration; Fungi; Benzene Derivatives; Bioreactors; Bacteria; Biodegradation, Environmental; Toluene; Benzene; China; Biofilms
PubMed: 38903883
DOI: 10.7717/peerj.17452 -
IMA Fungus Jun 2018Draft genomes of the species (syn. , two strains, , , and are presented Both mating types (MAT1-1 and MAT1-2) of are included. Two strains of that produce...
Draft genomes of the species (syn. , two strains, , , and are presented Both mating types (MAT1-1 and MAT1-2) of are included. Two strains of that produce sulfated homotyrosine echinocandin variants, FR209602, FR220897 and FR220899 are presented. The sequencing of , and cf has enabled mapping of the gene clusters encoding the chemical diversity from the echinocandin pathways, providing data that reveals the complexity of secondary metabolism in these different species. Overall these genomes provide a valuable resource for understanding the molecular processes underlying pathogenicity (in some cases), biology and toxin production of these economically important fungi.
PubMed: 30018880
DOI: 10.5598/imafungus.2018.09.01.13 -
Journal of Fungi (Basel, Switzerland) Mar 2024, a perennial herbaceous plant found in southwest China, has the potential to be used in the treatment of Alzheimer's disease. Endophytic fungi that reside within...
, a perennial herbaceous plant found in southwest China, has the potential to be used in the treatment of Alzheimer's disease. Endophytic fungi that reside within medicinal herbs play an important ecological role in their host plants and can serve as a valuable source for identifying active components. However, little is known about the diversity, and structure of endophytic fungi in . In this study, we investigated the community structure and diversity of endophytic fungi in the leaves, stems, and roots of at both 1- and 2-year-growth stages using a modern culture-independent method using both culture-independent (high-throughput sequencing, HTS) and culture-based methods. Using HTS, our results revealed that the richness and diversity of endophytic fungi in varied depending on the organs and growth stages. Specifically, stems and leaves exhibited significantly higher diversity compared to roots. Additionally, the highest diversity of endophytic fungi was observed in the stems of the 2-year-old plants. At the genus level, , , and were the most abundant endophytic fungi in 1-year-old samples, while , , and were prevalent in 2-year-old samples. A total of 55 endophytic fungal strains belonging to two phyla and 24 genera were isolated from 150 plant tissue segments using culture-based methods. The anti-acetylcholinesterase activity of these isolates was evaluated in vitro and five of them, PCAM010, PCBM027, LP41, SR60, and SM81, showed strong activity (>50% inhibition rate). These findings will serve as a theoretical basis and practical guide for comprehending the structural composition, biological diversity and bioactivity of endophytic fungi in .
PubMed: 38535204
DOI: 10.3390/jof10030195 -
Journal of Fungi (Basel, Switzerland) Jan 2024This study used the ITS approach based on Illumina MiSeq sequencing to assess the endosphere and rhizosphere fungal communities in healthy and diseased faba bean plants....
This study used the ITS approach based on Illumina MiSeq sequencing to assess the endosphere and rhizosphere fungal communities in healthy and diseased faba bean plants. The findings indicate that the most predominant phyla in all samples were Ascomycota (49.89-99.56%) and Basidiomycota (0.33-25.78%). In healthy endosphere samples, Glomeromycota (0.08-1.17%) was the only predominant phylum. In diseased endosphere samples, Olpidiomycota (0.04-1.75%) was the only predominant phylum. At the genus level, (0.47-35.21%) was more abundant in rhizosphere soil, while (3.48-91.16%) was predominant in the endosphere roots of faba bean plants. Significant differences were observed in the alpha diversity of rhizosphere samples from different germplasm resources ( < 0.05). The fungal community structures were clearly distinguished between rhizosphere and endosphere samples and between healthy and diseased endosphere samples ( < 0.05). was significantly enriched in diseased endosphere samples, whereas was enriched in healthy endosphere samples. and were enriched in diseased rhizosphere samples, while was enriched in healthy rhizosphere samples. Diseased samples displayed more strongly correlated genera than healthy samples. Saprotrophs accounted for a larger proportion of the fungal microbes in rhizosphere soil than in endosphere roots. This study provides a better understanding of the composition and diversity of fungal communities in the rhizosphere and endosphere of faba bean plants as well as a theoretical guidance for future research on the prevention or control of faba bean root rot disease.
PubMed: 38276030
DOI: 10.3390/jof10010084 -
Mycoscience 2022Some Asian fungi are morphologically very similar to European species but belong to different species. A fungus that resembles , which commonly occurs on the petioles of...
Some Asian fungi are morphologically very similar to European species but belong to different species. A fungus that resembles , which commonly occurs on the petioles of in Europe, was found on the petioles of spp. and other tree leaves in Japan. The apothecia of this fungus were smaller than those of , suggesting that it is a different species. To examine this possibility, specimens of this fungus were collected from various hosts in Japan. A detailed morphological examination elucidated that this fungus differed from in smaller apothecia, marginal cells of the ectal excipulum, and conidia. The ITS sequence difference between this fungus and was 3.3-4.3%, and they formed distinct clades in the phylogenetic analysis, supporting that they are different species. Consequently, a new species, is described. Since an undescribed phialophora-state was observed in the cultures of for the first time, the morphology under culture is also reported in detail.
PubMed: 37090199
DOI: 10.47371/mycosci.2022.07.003 -
JFMS Open Reports 2022A 10-year-old male neutered domestic shorthair cat from Quilmes (Province of Buenos Aires, Argentina) presented at the Infectious Diseases and Parasitology Unit with a...
CASE SUMMARY
A 10-year-old male neutered domestic shorthair cat from Quilmes (Province of Buenos Aires, Argentina) presented at the Infectious Diseases and Parasitology Unit with a hyperpigmented nodule of 5 cm diameter on the nasal plane with a small ulceration of more than 1 year's evolution. A scaly and hyperpigmented alopecic lesion of 3 cm in diameter was found on the lower edge of the tail. The patient was under immunosuppressive therapy with corticosteroids for lymphoplasmacytic duodenitis. Samples of the lesion present on the nasal plane were taken under a surgical procedure. In the wet mount preparations, pigmented irregular hyphae were observed. They developed dark colonies when cultured on Sabouraud medium. On micromorphology, structures compatible with species were identified. PCR and sequencing of (ITS1-5.8S-ITS2) confirmed as the etiologic agent. A therapeutic scheme that included a combination of itraconazole oral solution (1.5 mg/kg PO q12h) with terbinafine (30 mg/kg PO q24h) was indicated for a period of 10 months. The patient died of complications resulting from its underlying disease.
RELEVANCE AND NOVEL INFORMATION
As far as the authors are aware, this is the first study to report as an etiologic agent of phaeohyphomycosis in cats. In this case study, the species was identified using molecular tests.
PubMed: 35281676
DOI: 10.1177/20551169221077611 -
Medical Mycology Journal 2018Our group has continuously studied the epidemiology of visceral mycoses (VM) among autopsy cases in Japan from 1989 to 2013.
BACKGROUND AND METHODS
Our group has continuously studied the epidemiology of visceral mycoses (VM) among autopsy cases in Japan from 1989 to 2013.
RESULTS
First, from a total of 11,149 autopsied cases, 571 (5.1%) cases of VM were observed in 2013. It was significantly higher than those of 2005 (p < 0.05) and earlier. Notably, incidence of cases with mucormycetes (Muc) in 2013 was higher than that of 1997 and earlier (p < 0.001), especially in leukemia cases. Muc cases also showed higher rate of "severe infection" compared with other cases (p < .0001). Emerging diseases were also observed. Severe fever with thrombocytopenia syndrome cases showed high incidence of VM as a complication. In addition, we observed cases with the rare mycoses caused by Phialopohra verrucosa and Rhodotorula spp. in our analysis. Moreover, the predominant fungal agent of central nervous system infections changed from Cryptococcus spp. to Aspergillus spp. in 2013. This may be considered a breakthrough infection.
CONCLUSION
The prevalence of VM in 2013 became higher than those of 2005 (p < 0.05) and earlier, with a notable increase of incidence in cases with Muc. The occurrence of breakthrough VM and emerging mycoses deserve attention.
Topics: Adult; Age Distribution; Aspergillus; Autopsy; Central Nervous System Fungal Infections; Cryptococcus; Female; Humans; Incidence; Japan; Male; Middle Aged; Mycoses; Phialophora; Prevalence; Rhodotorula; Time Factors; Viscera
PubMed: 30504616
DOI: 10.3314/mmj.18-00003 -
Scientific Reports May 2018Indoor wet cells serve as an environmental reservoir for a wide diversity of melanized fungi. A total of 313 melanized fungi were isolated at five locations in...
Indoor wet cells serve as an environmental reservoir for a wide diversity of melanized fungi. A total of 313 melanized fungi were isolated at five locations in Guangzhou, China. Internal transcribed spacer (rDNA ITS) sequencing showed a preponderance of 27 species belonging to 10 genera; 64.22% (n = 201) were known as human opportunists in the orders Chaetothyriales and Venturiales, potentially causing cutaneous and sometimes deep infections. Knufia epidermidis was the most frequently encountered species in bathrooms (n = 26), while in kitchens Ochroconis musae (n = 14), Phialophora oxyspora (n = 12) and P. europaea (n = 10) were prevalent. Since the majority of species isolated are common agents of cutaneous infections and are rarely encountered in the natural environment, it is hypothesized that indoor facilities explain the previously enigmatic sources of infection by these organisms.
Topics: Animals; China; DNA, Fungal; Dermatomycoses; Ecosystem; Environmental Microbiology; Fungi; Household Articles; Humans; Incidence; Mycoses; Vertebrates; Water Microbiology
PubMed: 29769615
DOI: 10.1038/s41598-018-26071-7 -
Plants (Basel, Switzerland) Dec 2021adopts a tolerant strategy as a metal excluder to survive toxic metal concentrations. Biodiversity and the endophytic fungal community colonizing the roots were...
adopts a tolerant strategy as a metal excluder to survive toxic metal concentrations. Biodiversity and the endophytic fungal community colonizing the roots were assessed from a mining area (MA) and a neighboring non-mining area (nMA) in southwestern China. All roots formed fully developed dark septate endophytes (DSEs) and arbuscular mycorrhizal fungi (AMF). Total DSE colonization was higher for the MA versus nMA, in contrast to the total AMF colonization in the two sites. The DSE colonization was higher than AMF colonization regardless of the site. Pure-culture data showed that the fungi closely related to , and dominantly colonized the roots. A total of 450 operational taxonomic units (OTUs) were identified showing the presence of a distinct fungal community in MA and nMA, which was shaped by soil physiochemical properties, including soil Zn concentrations and organic matter. We found that accumulates and adapts efficiently to local endophytic fungi to achieve the expansion of its community, including the spontaneously reclaimed DSE. This property may be targeted to achieve its colonization with a pioneer plant for phytoremediation in the restoration of a vegetation cover in a metal-contaminated area.
PubMed: 34961202
DOI: 10.3390/plants10122731