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The Korean Journal of Parasitology Feb 2019
Topics: Animals; History, 20th Century; History, 21st Century; Host-Parasite Interactions; Humans; Paragonimiasis; Paragonimus; Parasitology; Republic of Korea; Sparganosis; Sparganum; Taenia solium; Taeniasis
PubMed: 30840805
DOI: 10.3347/kjp.2019.57.1.77 -
PloS One 2022The blood fluke Cardicola forsteri (Trematoda: Aporocotylidae) is a pathogen of ranched bluefin tuna in Japan and Australia. Genomics of Cardicola spp. have thus far...
The blood fluke Cardicola forsteri (Trematoda: Aporocotylidae) is a pathogen of ranched bluefin tuna in Japan and Australia. Genomics of Cardicola spp. have thus far been limited to molecular phylogenetics of select gene sequences. In this study, sequencing of the C. forsteri genome was performed using Illumina short-read and Oxford Nanopore long-read technologies. The sequences were assembled de novo using a hybrid of short and long reads, which produced a high-quality contig-level assembly (N50 > 430 kb and L50 = 138). The assembly was also relatively complete and unfragmented, comprising 66% and 7.2% complete and fragmented metazoan Benchmarking Universal Single-Copy Orthologs (BUSCOs), respectively. A large portion (> 55%) of the genome was made up of intergenic repetitive elements, primarily long interspersed nuclear elements (LINEs), while protein-coding regions cover > 6%. Gene prediction identified 8,564 hypothetical polypeptides, > 77% of which are homologous to published sequences of other species. The identification of select putative proteins, including cathepsins, calpains, tetraspanins, and glycosyltransferases is discussed. This is the first genome assembly of any aporocotylid, a major step toward understanding of the biology of this family of fish blood flukes and their interactions within hosts.
Topics: Animals; Cathepsins; Fish Diseases; Glycosyltransferases; Schistosoma; Schistosomatidae; Tuna
PubMed: 36240154
DOI: 10.1371/journal.pone.0276287 -
PLoS Neglected Tropical Diseases 2015Praziquantel (PZQ) is a key therapy for treatment of parasitic flatworm infections of humans and livestock, but the mechanism of action of this drug is unresolved....
Praziquantel (PZQ) is a key therapy for treatment of parasitic flatworm infections of humans and livestock, but the mechanism of action of this drug is unresolved. Resolving PZQ-engaged targets and effectors is important for identifying new druggable pathways that may yield novel antiparasitic agents. Here we use functional, genetic and pharmacological approaches to reveal that serotonergic signals antagonize PZQ action in vivo. Exogenous 5-hydroxytryptamine (5-HT) rescued PZQ-evoked polarity and mobility defects in free-living planarian flatworms. In contrast, knockdown of a prevalently expressed planarian 5-HT receptor potentiated or phenocopied PZQ action in different functional assays. Subsequent screening of serotonergic ligands revealed that several ergot alkaloids possessed broad efficacy at modulating regenerative outcomes and the mobility of both free living and parasitic flatworms. Ergot alkaloids that phenocopied PZQ in regenerative assays to cause bipolar regeneration exhibited structural modifications consistent with serotonergic blockade. These data suggest that serotonergic activation blocks PZQ action in vivo, while serotonergic antagonists phenocopy PZQ action. Importantly these studies identify the ergot alkaloid scaffold as a promising structural framework for designing potent agents targeting parasitic bioaminergic G protein coupled receptors.
Topics: Animals; Antiparasitic Agents; Drug Discovery; Ergot Alkaloids; Platyhelminths; Praziquantel
PubMed: 26367744
DOI: 10.1371/journal.pntd.0004063 -
Nature Ecology & Evolution Dec 2023Regenerative abilities vary dramatically across animals. Even amongst planarian flatworms, well-known for complete regeneration from tiny body fragments, some species...
Regenerative abilities vary dramatically across animals. Even amongst planarian flatworms, well-known for complete regeneration from tiny body fragments, some species have restricted regeneration abilities while others are almost entirely regeneration incompetent. Here, we assemble a diverse live collection of 40 planarian species to probe the evolution of head regeneration in the group. Combining quantification of species-specific head-regeneration abilities with a comprehensive transcriptome-based phylogeny reconstruction, we show multiple independent transitions between robust whole-body regeneration and restricted regeneration in freshwater species. RNA-mediated genetic interference inhibition of canonical Wnt signalling in RNA-mediated genetic interference-sensitive species bypassed all head-regeneration defects, suggesting that the Wnt pathway is linked to the emergence of planarian regeneration defects. Our finding that Wnt signalling has multiple roles in the reproductive system of the model species Schmidtea mediterranea raises the possibility that a trade-off between egg-laying, asexual reproduction by fission/regeneration and Wnt signalling drives regenerative trait evolution. Although quantitative comparisons of Wnt signalling levels, yolk content and reproductive strategy across our species collection remained inconclusive, they revealed divergent Wnt signalling roles in the reproductive system of planarians. Altogether, our study establishes planarians as a model taxon for comparative regeneration research and presents a framework for the mechanistic evolution of regenerative abilities.
Topics: Animals; Planarians; Transcriptome; Phylogeny; RNA
PubMed: 37857891
DOI: 10.1038/s41559-023-02221-7 -
ELife Apr 2018Two proteins required for the growth of a skin-like structure called the tegument in parasitic flatworms could be new targets for drugs to kill these parasites.
Two proteins required for the growth of a skin-like structure called the tegument in parasitic flatworms could be new targets for drugs to kill these parasites.
Topics: Animals; Parasites; Platyhelminths; Schistosoma mansoni
PubMed: 29701591
DOI: 10.7554/eLife.36813 -
BMC Biology Nov 2023Unlike most free-living platyhelminths, catenulids, the sister group to all remaining flatworms, do not have eyes. Instead, the most prominent sensory structures in...
BACKGROUND
Unlike most free-living platyhelminths, catenulids, the sister group to all remaining flatworms, do not have eyes. Instead, the most prominent sensory structures in their heads are statocysts or sensory pits. The latter, found in the family Stenostomidae, are concave depressions located laterally on the head that represent one of the taxonomically important traits of the family. In the past, the sensory pits of flatworms have been homologized with the cephalic organs of nemerteans, a clade that occupies a sister position to platyhelminths in some recent phylogenies. To test for this homology, we studied morphology and gene expression in the sensory pits of the catenulid Stenostomum brevipharyngium.
RESULTS
We used confocal and electron microscopy to investigate the detailed morphology of the sensory pits, as well as their formation during regeneration and asexual reproduction. The most prevalent cell type within the organ is epidermally-derived neuron-like cells that have cell bodies embedded deeply in the brain lobes and long neurite-like processes extending to the bottom of the pit. Those elongated processes are adorned with extensive microvillar projections that fill up the cavity of the pit, but cilia are not associated with the sensory pit. We also studied the expression patterns of some of the transcription factors expressed in the nemertean cephalic organs during the development of the pits. Only a single gene, pax4/6, is expressed in both the cerebral organs of nemerteans and sensory pits of S. brevipharyngium, challenging the idea of their deep homology.
CONCLUSIONS
Since there is no morphological or molecular correspondence between the sensory pits of Stenostomum and the cerebral organs of nemerteans, we reject their homology. Interestingly, the major cell type contributing to the sensory pits of stenostomids shows ultrastructural similarities to the rhabdomeric photoreceptors of other flatworms and expresses ortholog of the gene pax4/6, the pan-bilaterian master regulator of eye development. We suggest that the sensory pits of stenostomids might have evolved from the ancestral rhabdomeric photoreceptors that lost their photosensitivity and evolved secondary function. The mapping of head sensory structures on plathelminth phylogeny indicates that sensory pit-like organs evolved many times independently in flatworms.
Topics: Animals; Platyhelminths; Phylogeny; Transcription Factors; Reproduction, Asexual; Brain
PubMed: 37993917
DOI: 10.1186/s12915-023-01768-y -
Pharmacology 2021
Topics: Animals; Echinococcus multilocularis
PubMed: 33461203
DOI: 10.1159/000512769 -
Parasites & Vectors Dec 2022Glutamate carboxypeptidase 2 (GCP2) belongs to the M28B metalloprotease subfamily encompassing a variety of zinc-dependent exopeptidases that can be found in many...
BACKGROUND
Glutamate carboxypeptidase 2 (GCP2) belongs to the M28B metalloprotease subfamily encompassing a variety of zinc-dependent exopeptidases that can be found in many eukaryotes, including unicellular organisms. Limited information exists on the physiological functions of GCP2 orthologs in mammalian tissues outside of the brain and intestine, and such data are completely absent for non-mammalian species. Here, we investigate GCP2 orthologs found in trematodes, not only as putative instrumental molecules for defining their basal function(s) but also as drug targets.
METHODS
Identified genes encoding M28B proteases Schistosoma mansoni and Fasciola hepatica genomes were analyzed and annotated. Homology modeling was used to create three-dimensional models of SmM28B and FhM28B proteins using published X-ray structures as the template. For S. mansoni, RT-qPCR was used to evaluate gene expression profiles, and, by RNAi, we exploited the possible impact of knockdown on the viability of worms. Enzymes from both parasite species were cloned for recombinant expression. Polyclonal antibodies raised against purified recombinant enzymes and RNA probes were used for localization studies in both parasite species.
RESULTS
Single genes encoding M28B metalloproteases were identified in the genomes of S. mansoni and F. hepatica. Homology models revealed the conserved three-dimensional fold as well as the organization of the di-zinc active site. Putative peptidase activities of purified recombinant proteins were assayed using peptidic libraries, yet no specific substrate was identified, pointing towards the likely stringent substrate specificity of the enzymes. The orthologs were found to be localized in reproductive, digestive, nervous, and sensory organs as well as parenchymal cells. Knockdown of gene expression by RNAi silencing revealed that the genes studied were non-essential for trematode survival under laboratory conditions, reflecting similar findings for GCP2 KO mice.
CONCLUSIONS
Our study offers the first insight to our knowledge into M28B protease orthologs found in trematodes. Conservation of their three-dimensional structure, as well as tissue expression pattern, suggests that trematode GCP2 orthologs may have functions similar to their mammalian counterparts and can thus serve as valuable models for future studies aimed at clarifying the physiological role(s) of GCP2 and related subfamily proteases.
Topics: Animals; Mice; Trematoda; Fasciola hepatica; Schistosoma mansoni; Peptide Hydrolases; Mammals
PubMed: 36539882
DOI: 10.1186/s13071-022-05556-5 -
BMC Genomics May 2017To date, mitochondrial genomes of more than one hundred flatworms (Platyhelminthes) have been sequenced. They show a high degree of similarity and a strong taxonomic...
BACKGROUND
To date, mitochondrial genomes of more than one hundred flatworms (Platyhelminthes) have been sequenced. They show a high degree of similarity and a strong taxonomic bias towards parasitic lineages. The mitochondrial gene atp8 has not been confidently annotated in any flatworm sequenced to date. However, sampling of free-living flatworm lineages is incomplete. We addressed this by sequencing the mitochondrial genomes of the two small-bodied (about 1 mm in length) free-living flatworms Stenostomum sthenum and Macrostomum lignano as the first representatives of the earliest branching flatworm taxa Catenulida and Macrostomorpha respectively.
RESULTS
We have used high-throughput DNA and RNA sequence data and PCR to establish the mitochondrial genome sequences and gene orders of S. sthenum and M. lignano. The mitochondrial genome of S. sthenum is 16,944 bp long and includes a 1,884 bp long inverted repeat region containing the complete sequences of nad3, rrnS, and nine tRNA genes. The model flatworm M. lignano has the smallest known mitochondrial genome among free-living flatworms, with a length of 14,193 bp. The mitochondrial genome of M. lignano lacks duplicated genes, however, tandem repeats were detected in a non-coding region. Mitochondrial gene order is poorly conserved in flatworms, only a single pair of adjacent ribosomal or protein-coding genes - nad4l-nad4 - was found in S. sthenum and M. lignano that also occurs in other published flatworm mitochondrial genomes. Unexpectedly, we unambiguously identified the full metazoan mitochondrial protein-coding gene complement including atp8 in S. sthenum and M. lignano. A subsequent search detected atp8 in all mitochondrial genomes of polyclad flatworms published to date, although the gene wasn't previously annotated in these species.
CONCLUSIONS
Manual, but not automated genome annotation revealed the presence of atp8 in basally branching free-living flatworms, signifying both the importance of manual data curation and of diverse taxon sampling. We conclude that the loss of atp8 within flatworms is restricted to the parasitic taxon Neodermata.
Topics: Animals; Gene Order; Genes, Mitochondrial; Helminth Proteins; High-Throughput Nucleotide Sequencing; Platyhelminths; RNA, Transfer; RNA, Untranslated; Sequence Analysis, DNA; Sequence Analysis, RNA; Tandem Repeat Sequences
PubMed: 28549457
DOI: 10.1186/s12864-017-3807-2 -
Parasite (Paris, France) 2023Twenty-nine dactylogyrid species were reported from teleosts collected during a survey of the parasites of fishes of Moreton Bay, Queensland, Australia, in 2016. Two new...
Species of Dactylogyridae (Platyhelminthes: Monogenoidea) infecting marine fishes of Moreton Bay, Queensland, Australia, with proposals of Pleuronectitrema n. gen. and Ecnomotrema n. gen. and descriptions of 13 new species.
Twenty-nine dactylogyrid species were reported from teleosts collected during a survey of the parasites of fishes of Moreton Bay, Queensland, Australia, in 2016. Two new genera, Ecnomotrema n. gen. and Pleuronectitrema n. gen., were proposed, and 13 new species were illustrated and described: Atherinicus difficilis n. sp., Diversohamulus similis n. sp., and Ecnomotrema cetiosum n. sp. from Atherinomorus vaigiensis; Haliotrema apiculum n. sp. from Pempheris schwenkii; Haliotrema tugulduriforme n. sp. from Scarus ghobban; Lethrinitrema australiense n. sp., and Lethrinitrema lituus n. sp. from Lethrinus nebulosus; Tetrancistrum siganioides n. sp. from Siganus fuscescens; Ligophorus bostrychus n. sp. from Planiliza subviridis; Neohaliotrema gemmula n. sp. from Abudefduf vaigiensis; Neohaliotrema moretonense n. sp. from Ab. vaigiensis and Ab. bengalensis; and Pleuronectitrema spirula n. sp. from Pseudorhombus arsius (all from Moreton Bay); Pleuronectitrema kuwaitense Kritsky & Sey n. sp. was described from specimens collected from P. arsius in Kuwait during 1996. Ten new host records were recorded: Chauhanellus duriensis Lim, 1994 and Hamatopeduncularia thalassini Bychowsky & Nagibina, 1969 from Pararius proximus; Diplectanotrema sp. 1 and sp. 2 from Sillago maculata and Goniistius vestitus, respectively; Diversohamulus tricuspidatus Bychowsky & Nagibina, 1969 from At. vaigiensis; Hal. cf. dempsteri (Mizelle & Price, 1964) Young, 1968 from Prionurus microlepidotus; Hal. spirale Yamaguti, 1968 from Upeneus tragula; Ligophorus kaohsianghsieni (Gussev, 1962) Gussev, 1985 from Planiliza subviridis; and Neohaliotrema malayense Lim & Gibson, 2010 from Ab. bengalensis and Ab. whitleyi. Twenty-five new faunal records for Moreton Bay were recorded, including the new species listed above and C. duriensis, Diplectanotrema sp. 1 and sp. 2, Diversohamulus tricuspidatus Bychowsky & Nagibina, 1969, Glyphidohaptor phractophallus Kritsky, Galli, & Yang, 2007, Hal. cf. dempsteri, Hal. johnstoni Bychowsky & Nagibina, 1970, Hal. spirale, Yamaguti, 1968 Hamatopeduncularia thalassini Bychowsky & Nagibina, 1969, Lethrinitrema nebulosum Sun, Li, & Yang, 2014, Ligophorus kaohsianghsieni (Gussev, 1962) Gussev, 1985, Ligophorus parvicopulatrix Soo & Lim, 2012, and Neohaliotrema malayense Lim & Gibson, 2010. Three new combinations were proposed: Hal. spariense Roubal, 1981 as Euryhaliotrema spariense (Roubal, 1981) n. comb.; and Hal. arsiosa Venkatanarasaiah, 1984 and Hal. youngi Venkatanarasaiah, 1984 as Pleuronectitrema arsiosa (Venkatanarasaiah, 1984) n. comb. and Pleuronectitrema youngi (Venkatanarasaiah, 1984) n. comb., respectively; Haliotrema sp. of Zhang is transferred to Pleuronectitrema as Pleuronectitrema sp. Hal. ctenochaeti Yamaguti, 1968 was replaced with Hal. asymphylum n. nom. to remove it from homonymy with Hal. ctenochaeti Young, 1968. Pseudohaliotrematoides zancli Yamaguti, 1968 was transferred to Haliotrema as Haliotrema hawaiiense n. nom. Hal. zancli Yamaguti, 1968 was considered a junior subjective synonym of Hal. dempsteri.
Topics: Animals; Queensland; Bays; Platyhelminths; Trematoda; Australia; Fishes; Smegmamorpha
PubMed: 38117271
DOI: 10.1051/parasite/2023053