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Nature Ecology & Evolution Oct 2023
Topics: Animals; Anura; Chytridiomycota; Introduced Species; Animal Distribution
PubMed: 37567920
DOI: 10.1038/s41559-023-02184-9 -
The Science of the Total Environment Oct 2023Although many studies have examined polybrominated diphenyl ethers (PBDEs) and novel brominated flame retardants (NBFRs) in biota, information on the bioaccumulation...
Although many studies have examined polybrominated diphenyl ethers (PBDEs) and novel brominated flame retardants (NBFRs) in biota, information on the bioaccumulation characteristics of NBFRs from field works is limited. This study investigated the tissue-specific exposure to PBDEs and NBFRs in two reptilian (short-tailed mamushi and red-backed rat snake) and one amphibian species (black-spotted frog) prevalent in the Yangtze River Delta, China. The levels of ΣPBDEs and ΣNBFRs ranged from 4.4-250 and 2.9-22 ng/g lipid weight for snakes respectively and 2.9-120 and 7.1-97 ng/g lipid weight for frogs respectively. BDE-209, BDE-154, and BDE-47 were three major PBDE congeners while decabromodiphenylethane (DBDPE) dominated in NBFRs. Tissue burdens indicated that snake adipose was the major storage site of PBDEs and NBFRs. The biomagnification factors (BMFs) estimated from black-spotted frog to red-backed rat snake indicated the biomagnification of penta- to nona-BDE congeners (BMFs 1.1-4.0) but the lack of biomagnification of other BDE and all NBFR congeners (BMFs 0.16-0.78). Mother to egg transfer of PBDEs and NBFRs evaluated in frogs showed that maternal transfer efficiency was positively related to chemical lipophilicity. This is the first field study on the tissue distribution of NBFRs in reptiles and amphibians and the maternal transfer behavior of 5 major NBFRs. The results underline the bioaccumulation potential of alternative NBFRs.
Topics: Animals; Halogenated Diphenyl Ethers; Environmental Monitoring; Flame Retardants; Bioaccumulation; Tissue Distribution; China; Anura; Colubridae; Lipids
PubMed: 37391149
DOI: 10.1016/j.scitotenv.2023.165194 -
Nature Communications Jan 2024Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably...
Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably the genus Xenopus. Here we report a high-quality reference genome sequence for the western clawed frog, Xenopus tropicalis, along with draft chromosome-scale sequences of three distantly related emerging model frog species, Eleutherodactylus coqui, Engystomops pustulosus, and Hymenochirus boettgeri. Frog chromosomes have remained remarkably stable since the Mesozoic Era, with limited Robertsonian (i.e., arm-preserving) translocations and end-to-end fusions found among the smaller chromosomes. Conservation of synteny includes conservation of centromere locations, marked by centromeric tandem repeats associated with Cenp-a binding surrounded by pericentromeric LINE/L1 elements. This work explores the structure of chromosomes across frogs, using a dense meiotic linkage map for X. tropicalis and chromatin conformation capture (Hi-C) data for all species. Abundant satellite repeats occupy the unusually long (~20 megabase) terminal regions of each chromosome that coincide with high rates of recombination. Both embryonic and differentiated cells show reproducible associations of centromeric chromatin and of telomeres, reflecting a Rabl-like configuration. Our comparative analyses reveal 13 conserved ancestral anuran chromosomes from which contemporary frog genomes were constructed.
Topics: Animals; Chromatin; Evolution, Molecular; Genome; Anura; Xenopus; Centromere
PubMed: 38233380
DOI: 10.1038/s41467-023-43012-9 -
Proceedings. Biological Sciences Nov 2023The gut microbiome composition of terrestrial vertebrates is known to converge in response to common specialized dietary strategies, like leaf-eating (folivory) or ant-...
The gut microbiome composition of terrestrial vertebrates is known to converge in response to common specialized dietary strategies, like leaf-eating (folivory) or ant- and termite-eating (myrmecophagy). To date, such convergence has been studied in mammals and birds, but has been neglected in amphibians. Here, we analysed 15 anuran species (frogs and toads) representing five Neotropical families and demonstrated the compositional convergence of the gut microbiomes of distantly related myrmecophagous species. Specifically, we found that the gut microbial communities of bufonids and microhylids, which have independently evolved myrmecophagy, were significantly more similar than expected based on their hosts' evolutionary divergence. Conversely, we found that gut microbiome composition was significantly associated with host evolutionary history in some cases. For instance, the microbiome composition of , one of the few known amphibians that eat fruits, was not different from those of closely related tree frogs with an arthropod generalist diet. Bacterial taxa overrepresented in myrmecophagous species relative to other host families include , , and Rikenellaceae, suggesting diet-mediated selection and prey-to-predator transmission likely driving the observed compositional convergence. This study provides a basis for examining the roles of the gut microbiome in host tolerance and sequestration of toxic alkaloids from ants and termites.
Topics: Humans; Animals; Gastrointestinal Microbiome; Biological Evolution; Microbiota; Mammals; Anura; RNA, Ribosomal, 16S
PubMed: 37964521
DOI: 10.1098/rspb.2023.2223 -
Epigenetics Dec 2023Age-associated changes in DNA methylation have been characterized across various animals, but not yet in amphibians, which are of particular interest because they...
Age-associated changes in DNA methylation have been characterized across various animals, but not yet in amphibians, which are of particular interest because they include widely studied model organisms. In this study, we present clear evidence that the aquatic vertebrate species displays patterns of age-associated changes in DNA methylation. We have generated whole-genome bisulfite sequencing (WGBS) profiles from skin samples of nine frogs representing young, mature, and old adults and characterized the gene- and chromosome-scale DNA methylation changes with age. Many of the methylation features and changes we observe are consistent with what is known in mammalian species, suggesting that the mechanism of age-related changes is conserved. Moreover, we selected a few thousand age-associated CpG sites to build an assay based on targeted DNA methylation analysis (TBSseq) to expand our findings in future studies involving larger cohorts of individuals. Preliminary results of a pilot TBSeq experiment recapitulate the findings obtained with WGBS setting the basis for the development of an epigenetic clock assay. The results of this study will allow us to leverage the unique resources available for to study how DNA methylation relates to other hallmarks of ageing.
Topics: Animals; DNA Methylation; Xenopus laevis; Xenopus; CpG Islands; Whole Genome Sequencing; Sulfites; Sequence Analysis, DNA; Mammals
PubMed: 37092296
DOI: 10.1080/15592294.2023.2201517 -
GeroScience Feb 2024To address how conserved DNA methylation-based epigenetic aging is in diverse branches of the tree of life, we generated DNA methylation data from African clawed frogs...
To address how conserved DNA methylation-based epigenetic aging is in diverse branches of the tree of life, we generated DNA methylation data from African clawed frogs (Xenopus laevis) and Western clawed frogs (Xenopus tropicalis) and built multiple epigenetic clocks. Dual species clocks were developed that apply to both humans and frogs (human-clawed frog clocks), supporting that epigenetic aging processes are evolutionary conserved outside mammals. Highly conserved positively age-related CpGs are located in neural-developmental genes such as uncx, tfap2d as well as nr4a2 implicated in age-associated disease. We conclude that signatures of epigenetic aging are evolutionary conserved between frogs and mammals and that the associated genes relate to neural processes, altogether opening opportunities to employ Xenopus as a model organism to study aging.
Topics: Animals; Humans; Xenopus laevis; DNA Methylation; Xenopus; Aging; Epigenesis, Genetic; Mammals
PubMed: 37270437
DOI: 10.1007/s11357-023-00840-3 -
Molecules and Cells Dec 2023A recent study revealed that the loss of Deup1 expression does not affect either centriole amplification or multicilia formation. Therefore, the deuterosome is not a...
A recent study revealed that the loss of Deup1 expression does not affect either centriole amplification or multicilia formation. Therefore, the deuterosome is not a platform for amplification of centrioles. In this study, we examine whether gain-of-function of Deup1 affects the development of multiciliated ependymal cells. Our time-lapse study reveals that deuterosomes with an average diameter of 300 nm have two different fates during ependymal differentiation. In the first instance, deuterosomes are scattered and gradually disappear as cells become multiciliated. In the second instance, deuterosomes self-organize into a larger aggregate, called a deuterosome cluster (DC). Unlike scattered deuterosomes, DCs possess centriole components primarily within their large structure. A characteristic of DC-containing cells is that they tend to become primary ciliated rather than multiciliated. Our electroporation study shows that DCs in ependymal tissue are mostly observed at early postnatal stages, but are scarce at late postnatal stages, suggesting the presence of DC antagonists within the differentiating cells. Importantly, from our bead flow assay, ectopic expression of Deup1 significantly impairs cerebrospinal fluid flow. Furthermore, we show that expression of mouse Deup1 in Xenopus embryos has an inhibitory effect on differentiation of multiciliated cells in the epidermis. Taken together, we conclude that the DC formation of Deup1 in multiciliated cells inhibits production of multiple centrioles.
Topics: Animals; Mice; Cell Differentiation; Cells, Cultured; Centrioles; Cilia; Xenopus laevis
PubMed: 38052490
DOI: 10.14348/molcells.2023.0149 -
Journal of Evolutionary Biology Jul 2023Colour is an important component of many different defensive strategies, but signal efficacy and detectability will also depend on the size of the coloured structures,...
Colour is an important component of many different defensive strategies, but signal efficacy and detectability will also depend on the size of the coloured structures, and how pattern size interacts with the background. Consequently, size-dependent changes in colouration are common among many different species as juveniles and adults frequently use colour for different purposes in different environmental contexts. A widespread strategy in many species is switching from crypsis to conspicuous aposematic signalling as increasing body size can reduce the efficacy of camouflage, while other antipredator defences may strengthen. Curiously, despite being chemically defended, the gold-striped frog (Lithodytes lineatus, Leptodactylidae) appears to do the opposite, with bright yellow stripes found in smaller individuals, whereas larger frogs exhibit dull brown stripes. Here, we investigated whether size-dependent differences in colour support distinct defensive strategies. We first used visual modelling of potential predators to assess how colour contrast varied among frogs of different sizes. We found that contrast peaked in mid-sized individuals while the largest individuals had the least contrasting patterns. We then used two detection experiments with human participants to evaluate how colour and body size affected overall detectability. These experiments revealed that larger body sizes were easier to detect, but that the colours of smaller frogs were more detectable than those of larger frogs. Taken together our data support the hypothesis that the primary defensive strategy changes from conspicuous aposematism to camouflage with increasing size, implying size-dependent differences in the efficacy of defensive colouration. We discuss our data in relation to theories of size-dependent aposematism and evaluate the evidence for and against a possible size-dependent mimicry complex with sympatric poison frogs (Dendrobatidae).
Topics: Animals; Adult; Humans; Biological Mimicry; Anura; Body Size
PubMed: 36514842
DOI: 10.1111/jeb.14143 -
Chemosphere Nov 2023Understanding the effects of pesticides on non-target organisms is essential to assess the impact of these xenobiotics on the environment, allowing for a more...
Understanding the effects of pesticides on non-target organisms is essential to assess the impact of these xenobiotics on the environment, allowing for a more informative and safer usage. The present study sought to evaluate the response of Scinax squalirostris tadpoles when exposed to different concentrations of two herbicides, DEZ® (i.e., dichlorophenoxyacetic acid or 2,4-D) and Roundup® Original (i.e., glyphosate). We collected 140 tadpoles between Gosner's 25 and 34 stages in a preservation area of the South American jelly palm Butia odorata. The animals were separated into eight groups and maintained in aquariums: acclimatization control (17 days), exposure control (24 days), and six exposure groups (7 days), including three concentration groups of each pesticide (4 μg/L, 15 μg/L, and 30 μg/L 2,4-D acid equivalent; 65 μg/L, 250 μg/L, and 500 μg/L glyphosate acid equivalent). Markers of body condition (length, body mass, K and Kn index) and oxidative balance (superoxide dismutase, catalase, glutathione S-transferase, TBARS, and carbonyl proteins) were analyzed. After 24 days (17 days of acclimation plus 7 days of exposure), tadpoles exposed to 15 μg/L of 2,4-D and 65 μg/L of glyphosate grew at higher than expected concentrations. They also had less lipoperoxidation than control tadpoles and higher superoxide dismutase, catalase, and glutathione S-transferase activity, specifically at the highest herbicide concentrations (2,4-D: 30 μg/L; glyphosate: 500 μg/L of glyphosate). Only the highest concentration of 2,4-D determined an increase in the levels of carbonyl proteins, indicating oxidative damage induced. DEZ® required more antioxidant defenses and induced a concentration-dependent answer of carbonylated proteins, suggesting oxidative stress and more toxic potential. These results may help government agencies make more conscious decisions regarding the usage of these chemicals and consider a balance between the conservation of amphibian species and agribusiness economic sustenance.
Topics: Animals; Anura; Herbicides; Catalase; Pesticides; Glutathione Transferase; Biomarkers; 2,4-Dichlorophenoxyacetic Acid; Glyphosate
PubMed: 37611768
DOI: 10.1016/j.chemosphere.2023.139918 -
Journal of Morphology Jul 2023The main cannabinoid receptor CB1R first shows expression during early neurula stage in chicken (Gallus gallus) embryos, and at early tailbud stage in the frog (Xenopus...
The main cannabinoid receptor CB1R first shows expression during early neurula stage in chicken (Gallus gallus) embryos, and at early tailbud stage in the frog (Xenopus laevis) embryos. This raises the question of whether CB1R regulates similar or distinct processes during the embryonic development of these two species. Here, we examined whether CB1R influences the migration and morphogenesis of neural crest cells and derivatives in both chicken and frog embryos. Early neurula stage chicken embryos were exposed to arachidonyl-2'-chloroethylamide (ACEA; a CB1R agonist), N-(Piperidin-1-yl)-5-(4-iodophenyl)-1-(2,4-dichlorophenyl)-4-methyl-1H-pyrazole-3-carboxamide (AM251; a CB1R inverse agonist) or Blebbistatin (nonmuscle Myosin II inhibitor) in ovo and examined during migration of neural crest cells and at condensing cranial ganglia stage. Early tailbud stage frog embryos were bathed in ACEA, AM251 or Blebbistatin, and analyzed at late tailbud stage for changes in craniofacial and eye morphogenesis, and in patterning and morphology of melanophores (neural crest-derived pigment cells). In chicken embryos exposed to ACEA and Myosin II inhibitor, cranial neural crest cells migrated erratically from the neural tube, and the right, but not the left, ophthalmic nerve of the trigeminal ganglia was affected in ACEA- and AM251-treated embryos. In frog embryos with inactivation or activation of CB1R, or inhibition of Myosin II, the craniofacial and eye regions were smaller and/or less developed, and the melanophores overlying the posterior midbrain were more dense, and stellate in morphology, than the same tissues and cells in control embryos. This data suggests that despite differences in the time of onset of expression, normal activity of CB1R is required for sequential steps in migration and morphogenesis of neural crest cells and derivatives in both chicken and frog embryos. In addition, CB1R may signal through Myosin II to regulate migration and morphogenesis of neural crest cells and derivatives in chicken and frog embryos.
Topics: Chick Embryo; Animals; Female; Neural Crest; Chickens; Drug Inverse Agonism; Morphogenesis; Embryonic Development; Anura
PubMed: 37313768
DOI: 10.1002/jmor.21606