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ELife Mar 2024Gasdermins oligomerize to form pores in the cell membrane, causing regulated lytic cell death called pyroptosis. Mammals encode five gasdermins that can trigger...
Gasdermins oligomerize to form pores in the cell membrane, causing regulated lytic cell death called pyroptosis. Mammals encode five gasdermins that can trigger pyroptosis: GSDMA, B, C, D, and E. Caspase and granzyme proteases cleave the linker regions of and activate GSDMB, C, D, and E, but no endogenous activation pathways are yet known for GSDMA. Here, we perform a comprehensive evolutionary analysis of the gasdermin family. A gene duplication of GSDMA in the common ancestor of caecilian amphibians, reptiles, and birds gave rise to GSDMA-D in mammals. Uniquely in our tree, amphibian, reptile, and bird GSDMA group in a separate clade than mammal GSDMA. Remarkably, GSDMA in numerous bird species contain caspase-1 cleavage sites like YVAD or FASD in the linker. We show that GSDMA from birds, amphibians, and reptiles are all cleaved by caspase-1. Thus, GSDMA was originally cleaved by the host-encoded protease caspase-1. In mammals the caspase-1 cleavage site in GSDMA is disrupted; instead, a new protein, GSDMD, is the target of caspase-1. Mammal caspase-1 uses exosite interactions with the GSDMD C-terminal domain to confer the specificity of this interaction, whereas we show that bird caspase-1 uses a stereotypical tetrapeptide sequence to confer specificity for bird GSDMA. Our results reveal an evolutionarily stable association between caspase-1 and the gasdermin family, albeit a shifting one. Caspase-1 repeatedly changes its target gasdermin over evolutionary time at speciation junctures, initially cleaving GSDME in fish, then GSDMA in amphibians/reptiles/birds, and finally GSDMD in mammals.
Topics: Animals; Caspase 1; Caspases; Gasdermins; Inflammasomes; Amphibians; Reptiles; Birds
PubMed: 38497531
DOI: 10.7554/eLife.92362 -
Integrated Environmental Assessment and... Sep 2023The regulation of populations through density dependence (DD) has long been a central tenet of studies of ecological systems. As an important factor in regulating... (Review)
Review
The regulation of populations through density dependence (DD) has long been a central tenet of studies of ecological systems. As an important factor in regulating populations, DD is also crucial for understanding risks to populations from stressors, including its incorporation into population models applied for this purpose. However, study of density-dependent regulation is challenging because it can occur through various mechanisms, and their identification in the field, as well as the quantification of the consequences on individuals and populations, can be difficult. We conducted a targeted literature review specifically focusing on empirical laboratory or field studies addressing negative DD in freshwater fish and small rodent populations, two vertebrate groups considered in pesticide Ecological Risk Assessment (ERA). We found that the most commonly recognized causes of negative DD were food (63% of 19 reviewed fish studies, 40% of 25 mammal studies) or space limitations (32% of mammal studies). In addition, trophic interactions were reported as causes of population regulation, with predation shaping mostly small mammal populations (36% of the mammal studies) and cannibalism impacting freshwater fish (26%). In the case of freshwater fish, 63% of the studies were experimental (i.e., with a length of weeks or months). They generally focused on the individual-level causes and effects of DD, and had a short duration. Moreover, DD affected mostly juvenile growth and survival of fish (68%). On the other hand, studies on small mammals were mainly based on time series analyzing field population properties over longer timespans (68%). Density dependence primarily affected survival in subadult and adult mammal stages and, to a lesser extent, reproduction (60% vs. 36%). Furthermore, delayed DD was often observed (56%). We conclude by making suggestions on future research paths, providing recommendations for including DD in population models developed for ERA, and making the best use of the available data. Integr Environ Assess Manag 2023;00:1-12. © 2023 Syngenta Crop Protection. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).
PubMed: 37750350
DOI: 10.1002/ieam.4845 -
The American Journal of Tropical... Dec 2023Surveillance methods that permit rapid detection of circulating pathogens in low-resource settings are desperately needed. In this study, we evaluated a mosquito...
Surveillance methods that permit rapid detection of circulating pathogens in low-resource settings are desperately needed. In this study, we evaluated a mosquito bloodmeal-based surveillance method ("xenosurveillance") in rural Guatemala. Twenty households from two villages (Los Encuentros and Chiquirines) in rural southwest Guatemala were enrolled and underwent weekly prospective surveillance from August 2019 to December 2019 (16 weeks). When febrile illness was reported in a household, recently blood-fed mosquitoes were collected from within dwellings and blood samples taken from each member of the household. Mosquitoes were identified to species and blood sources identified by sequencing. Shotgun metagenomic sequencing was used to identify circulating viruses. Culex pipiens (60.9%) and Aedes aegypti (18.6%) were the most abundant mosquitoes collected. Bloodmeal sources were most commonly human (32.6%) and chicken (31.6%), with various other mammal and avian hosts detected. Several mosquito-specific viruses were detected, including Culex orthophasma virus. Human pathogens were not detected. Therefore, xenosurveillance may require more intensive sampling to detect human pathogens in Guatemala and ecologically similar localities in Central America.
Topics: Animals; Humans; Guatemala; Prospective Studies; Mosquito Vectors; Culex; Aedes; Viruses; Mammals; Chickens
PubMed: 37972312
DOI: 10.4269/ajtmh.22-0774 -
Scientific Reports Jul 2023Dinosaurs and mammals have coexisted for the last ~ 230 million years. Both groups arose during the Late Triassic and diversified throughout the Mesozoic and into...
Dinosaurs and mammals have coexisted for the last ~ 230 million years. Both groups arose during the Late Triassic and diversified throughout the Mesozoic and into the Cenozoic (the latter in the form of birds). Although they undoubtedly interacted in many ways, direct fossil evidence for their interaction is rare. Here we report a new fossil find from the Lujiatun Member of the Lower Cretaceous Yixian Formation of China, showing a gobiconodontid mammal and psittacosaurid dinosaur locked in mortal combat. We entertain various hypothesized explanations for this association, but the balance of the evidence suggests that it represents a predation attempt on the part of the smaller mammal, suddenly interrupted by, and preserved within, a lahar-type volcanic debris flow. Mesozoic mammals are usually depicted as having lived in the shadows of their larger dinosaurian contemporaries, but this new fossil convincingly demonstrates that mammals could pose a threat even to near fully-grown dinosaurs. The Yixian Formation-and the Chinese fossil Jehol Biota more broadly-have played a particularly important role in revealing the diversity of small-bodied dinosaurs and other fauna. We anticipate that the volcanically derived obrution deposits specific to the Lujiatun Member will likewise continue to yield evidence for biotic interactions otherwise unknown from the rest of the fossil record.
Topics: Animals; Fossils; Dinosaurs; Birds; Mammals; Predatory Behavior; Biological Evolution; Phylogeny
PubMed: 37464026
DOI: 10.1038/s41598-023-37545-8 -
Animals : An Open Access Journal From... Oct 2023The order Sirenia comprises several species of manatees and one species of dugong. These popular marine mammals are relatively recent acquisitions to zoological parks... (Review)
Review
The order Sirenia comprises several species of manatees and one species of dugong. These popular marine mammals are relatively recent acquisitions to zoological parks throughout the world. As far as we know, there are less than 200 manatees, mostly American, a few African, and ever less Amazonian, currently in zoological parks. American manatees are predominantly found in zoos in Europe, North America, and in some Asian countries, while African ones are present exclusively in Asian zoos. The living conditions of captive manatees differ considerably from zoo to zoo (i.e., numbers, sex ratio, outdoor vs. indoor habitats, complex vs. simple habitats). Most research on manatee behaviour has been relatively recent, and studies on cognition, sociality, and ecology have a significant impact on our perception of manatee needs and management, with wider implications for their welfare. In the wild, manatees demonstrated various cognitive capacities; spatial memory and learning abilities play an important role in their daily life in a complex and dynamic environment. Furthermore, there is evidence that these mammals are more social animals than expected. Individuals show various personality traits on the boldness-shyness continuum and their sociality varies. All those parameters are important in terms of animal welfare. Several behavioural studies showed that standardized enrichment programs benefit and ensure the welfare of captive zoo animals. However, obtaining accurate information on the presence of manatees in zoos, living conditions, management, and consequently welfare remains challenging. This study examines the current knowledge on manatee behaviour and cognition and then discusses different approaches to improving the welfare of this charismatic marine mammal in zoological parks.
PubMed: 37893952
DOI: 10.3390/ani13203228 -
ESC Heart Failure Dec 2023Mechanochemical signalling drives organogenesis and is highly conserved in mammal evolution. Regaining recovery in myocardial jeopardy by inducing principles linking...
AIMS
Mechanochemical signalling drives organogenesis and is highly conserved in mammal evolution. Regaining recovery in myocardial jeopardy by inducing principles linking cardiovascular therapy and clinical outcome has been the dream of scientists for decades. Concepts involving embryonic pathways to regenerate adult failing hearts became popular in the early millennium. Since then, abundant data on stem cell research have been published, never reaching widespread application in heart failure therapy. Another conceptual access, using mechanotransduction in cardiac veins to limit myocardial decay, is pressure-controlled intermittent coronary sinus occlusion (PICSO). Recently, we reported acute molecular signs and signals of PICSO activating regulatory miRNA and inducing cell proliferation mimicking cardiac development in adult failing hearts. According to a previously formulated hypothesis, 'embryonic recall', this study aimed to define molecular signals involved in endogenous heart repair during PICSO and study their relation to patient survival.
METHODS AND RESULTS
We previously reported a study on the acute molecular effects of PICSO in an observational non-randomized study. Eight out of the thirty-two patients with advanced heart failure undergoing cardiac resynchronization therapy (CRT) were treated with PICSO. Survival was monitored over 10 years, and coronary sinus blood samples were collected during intervention before and after 20 min and tested for miRNA signalling and proliferation when co-cultured with cardiomyocytes. A numerically lower death rate post-CRT and PICSO as compared with control CRT only, and a non-significant reduction in all-cause mortality risk of 42% was observed (37.5% vs. 54.0%, relative risk = 0.58, 95% confidence interval: 0.17-2.05; P = 0.402). Four miRNAs involved in cell cycle, proliferation, morphogenesis, embryonic development, and apoptosis significantly increased concomitantly in survivors and PICSO compared with a decrease in non-survivors (hsa-miR Let7b, P < 0.01; hsa-miR- 421, P < 0.006; hsa-miR 363-3p, P < 0.03 and hsa-miR 19b-3p P < 0.01). In contrast, three miRNAs involved in proliferation and survival, determining cell fate, and recycling endosomes decreased in survivors and PICSO (hsa miR 101-3p, P < 0.03; hsa-miR 25-3p, P < 002; hsa-miR 30d-5p P < 0.04). In vitro cellular proliferation increased in survivors and lowered in non-survivors showing a pattern distinction, discriminating longevity according to up to 10-year survival in heart failure patients.
CONCLUSIONS
This study proposes that generating regenerative signals observed during PICSO intervention relate to patient outcomes. Morphogenetic pathways induced by periods of flow reversal in cardiac veins in a domino-like pattern transform embryonic into regenerative signals. Studies supporting the conversion of mechanochemical signals into regenerative molecules during PICSO are warranted to substantiate predictive power on patient longevity, opening new therapeutic avenues in otherwise untreatable heart failure.
Topics: Adult; Animals; Humans; Myocytes, Cardiac; Circulating MicroRNA; Mechanotransduction, Cellular; MicroRNAs; Heart Failure; Cell Proliferation; Mammals
PubMed: 37752740
DOI: 10.1002/ehf2.14516 -
Integrative and Comparative Biology Dec 2023Land-to-sea evolutionary transitions are great transformations where terrestrial amniote clades returned to aquatic environments. These secondarily aquatic amniote...
Land-to-sea evolutionary transitions are great transformations where terrestrial amniote clades returned to aquatic environments. These secondarily aquatic amniote clades include charismatic marine mammal and marine reptile groups, as well as countless semi-aquatic forms that modified their terrestrial locomotor anatomy to varying degrees to be suited for swimming via axial and/or appendicular propulsion. The terrestrial ancestors of secondarily aquatic groups would have started off swimming strikingly differently from one another given their evolutionary histories, as inferred by the way modern terrestrial amniotes swim. With such stark locomotor functional differences between reptiles and mammals, we ask if this impacted these transitions. Axial propulsion appears favored by aquatic descendants of terrestrially sprawling quadrupedal reptiles, with exceptions. Appendicular propulsion is more prevalent across the aquatic descendants of ancestrally parasagittal-postured mammals, particularly early transitioning forms. Ancestral terrestrial anatomical differences that precede secondarily aquatic invasions between mammals and reptiles, as well as the distribution of axial and appendicular swimming in secondarily aquatic clades, may indicate that ancestral terrestrial locomotor anatomy played a role, potentially in both constraint and facilitation, in certain aquatic locomotion styles. This perspective of the land-to-sea transition can lead to new avenues of functional, biomechanical, and developmental study of secondarily aquatic transitions.
Topics: Animals; Locomotion; Biological Evolution; Swimming; Mammals; Cetacea
PubMed: 37591628
DOI: 10.1093/icb/icad112 -
Nature Communications Jul 2023The evolution of endothermy in vertebrates is a major research topic in recent decades that has been tackled by a myriad of research disciplines including paleontology,...
The evolution of endothermy in vertebrates is a major research topic in recent decades that has been tackled by a myriad of research disciplines including paleontology, anatomy, physiology, evolutionary and developmental biology. The ability of most mammals to maintain a relatively constant and high body temperature is considered a key adaptation, enabling them to successfully colonize new habitats and harsh environments. It has been proposed that in mammals the anterior nasal cavity, which houses the maxilloturbinal, plays a pivotal role in body temperature maintenance, via a bony system supporting an epithelium involved in heat and moisture conservation. The presence and the relative size of the maxilloturbinal has been proposed to reflect the endothermic conditions and basal metabolic rate in extinct vertebrates. We show that there is no evidence to relate the origin of endothermy and the development of some turbinal bones by using a comprehensive dataset of µCT-derived maxilloturbinals spanning most mammalian orders. Indeed, we demonstrate that neither corrected basal metabolic rate nor body temperature significantly correlate with the relative surface area of the maxilloturbinal. Instead, we identify important variations in the relative surface area, morpho-anatomy, and complexity of the maxilloturbinal across the mammalian phylogeny and species ecology.
Topics: Animals; Mammals; Acclimatization; Basal Metabolism; Body Temperature; Ecology
PubMed: 37479710
DOI: 10.1038/s41467-023-39994-1 -
One Health Outlook Dec 2023Jeilongvirus was proposed as a new genus within the Paramyxoviridae in 2018. The advancement in metagenomic approaches has encouraged multiple reports of Jeilongvirus...
BACKGROUND
Jeilongvirus was proposed as a new genus within the Paramyxoviridae in 2018. The advancement in metagenomic approaches has encouraged multiple reports of Jeilongvirus detection following the initial species discovery, enriching species diversity and host range within the genus. However, Jeilongvirus remains understudied in Singapore, where interfaces between humans and small mammals are plentiful.
METHODS
Here, we utilized metagenomic sequencing for the exploration of viral diversity in small mammal tissues. Upon discovery of Jeilongvirus, molecular screening and full genome sequencing was conducted, with the data used to conduct statistical modelling and phylogenetic analysis.
RESULTS
We report the presence of Jeilongvirus in four species of Singapore wild small mammals, detected in their spleen and kidney. We show that full genomes of three Singapore Jeilongvirus encode for eight ORFs including the small hydrophobic and transmembrane proteins. All generated genomes cluster phylogenetically within the small mammal subclade, but share low genetic similarity with representative Jeilongvirus species. Statistical modelling showed no spatial or temporal patterns and differences among species, life history traits and habitat types.
CONCLUSIONS
This study serves as a basis for understanding dynamics between Jeilongvirus and small mammal hosts in Singapore by displaying the virus generalist nature. In addition, the initial detection can help to invoke improved routine surveillance and detection of circulating pathogens in synanthropic hosts.
PubMed: 38111066
DOI: 10.1186/s42522-023-00094-1 -
Journal of Translational Medicine Mar 2024Lipid metabolism is widely reprogrammed in tumor cells. Lipid droplet is a common organelle existing in most mammal cells, and its complex and dynamic functions in... (Review)
Review
Lipid metabolism is widely reprogrammed in tumor cells. Lipid droplet is a common organelle existing in most mammal cells, and its complex and dynamic functions in maintaining redox and metabolic balance, regulating endoplasmic reticulum stress, modulating chemoresistance, and providing essential biomolecules and ATP have been well established in tumor cells. The balance between lipid droplet formation and catabolism is critical to maintaining energy metabolism in tumor cells, while the process of energy metabolism affects various functions essential for tumor growth. The imbalance of synthesis and catabolism of fatty acids in tumor cells leads to the alteration of lipid droplet content in tumor cells. Diacylglycerol acyltransferase 1 and diacylglycerol acyltransferase 2, the enzymes that catalyze the final step of triglyceride synthesis, participate in the formation of lipid droplets in tumor cells and in the regulation of cell proliferation, migration and invasion, chemoresistance, and prognosis in tumor. Several diacylglycerol acyltransferase 1 and diacylglycerol acyltransferase 2 inhibitors have been developed over the past decade and have shown anti-tumor effects in preclinical tumor models and improvement of metabolism in clinical trials. In this review, we highlight key features of fatty acid metabolism and different paradigms of diacylglycerol acyltransferase 1 and diacylglycerol acyltransferase 2 activities on cell proliferation, migration, chemoresistance, and prognosis in tumor, with the hope that these scientific findings will have potential clinical implications.
Topics: Animals; Humans; Diacylglycerol O-Acyltransferase; Triglycerides; Lipid Metabolism; Lipogenesis; Cell Proliferation; Neoplasms; Mammals
PubMed: 38500157
DOI: 10.1186/s12967-024-05084-z