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Bioresource Technology Nov 2019The indiscriminate use of pesticides leads to serious food safety and toxicity issues and threatens the environment and biodiversity. Pseudomonas nitroreducens AR-3...
The indiscriminate use of pesticides leads to serious food safety and toxicity issues and threatens the environment and biodiversity. Pseudomonas nitroreducens AR-3 isolated from pesticide contaminated agricultural soil removed 97% of chlorpyrifos (CP) in just 8 h, in a mineral salt medium (MSM) containing glucose (1.0 g/L) and yeast extract (0.5 g/L) at 30 °C and 2% (v/v) inoculum when challenged with 100 mg/L CP. 3, 5, 6-trichloro 2-pyridinol (TCP), the degradation product of CP was detected only in low levels, indicating its further degradation. Organophosphate hydrolase (OPH), the enzyme considered responsible for CP degradation, had an intracellular localization. Crude OPH (1 mg/ml) removed 42% of 100 mg/L chlorpyrifos in just 2 h, indicating a rapid rate of degradation. Ultra-fast degradation of chlorpyrifos with an inducible OPH marks the potential of P. nitroreducens AR-3 for bioremediation of organophosphates. The strain AR-3 has the fastest rate of organophosphate degradation reported till date among Pseudomonads.
Topics: Biodegradation, Environmental; Chlorpyrifos; Pesticides; Pseudomonas
PubMed: 31466023
DOI: 10.1016/j.biortech.2019.122025 -
Ecotoxicology and Environmental Safety Sep 2020Microorganisms' role in pesticide degradation has been studied widely. Insitu treatments of effluents containing pesticides such as biological beds (biobeds) are...
Microorganisms' role in pesticide degradation has been studied widely. Insitu treatments of effluents containing pesticides such as biological beds (biobeds) are efficient biological systems where biomixture (mixture of substrates) and microorganisms are the keys in pesticide treatment; however, microbial activity has been studied poorly, and its potential beyond biobeds has not been widely explored. In this study, the capacity of microbial consortium and bacteria-pure strains isolated from a biomixture (soil-straw; 1:1, v/v) used to treat agricultural effluents under real conditions were evaluated during a bioremediation process of five pesticides commonly used Yucatan Mexico. Atrazine, carbofuran, and glyphosate had the highest degradations (>90%) using the microbial consortium; 2,4-D and diazinon were the most persistent (DT = 8.64 and 6.63 days). From the 21 identified bacteria species in the microbial consortium, Pseudomonas nitroreducens was the most abundant (52%) according to identified sequences. For the pure strains evaluation 2,4-D (DT = 9.87 days), carbofuran (DT = 8.27 days), diazinon (DT = 8.80 days) and glyphosate (DT = 8.59 days) were less persistent in the presence of the mixed consortium (Ochrobactrum sp. DGG-1-3, Ochrobactrum sp. Ge-14, Ochrobactrum sp. B18 and Pseudomonas citronellolis strain ADA-23B). Time, pesticide, and strain type were significant (P < 0.05) in pesticide degradation, so this process is multifactorial. Microbial consortium and pure strains can be used to increase the biobed efficiency by inoculation, even in the remediation of soil contaminated by pesticides in agricultural areas.
Topics: 2,4-Dichlorophenoxyacetic Acid; Agriculture; Atrazine; Bacteria; Biodegradation, Environmental; Carbofuran; Diazinon; Glycine; Microbial Consortia; Pesticides; Pseudomonas; Soil; Soil Pollutants; Glyphosate
PubMed: 32464440
DOI: 10.1016/j.ecoenv.2020.110734 -
Metabolic Engineering Jul 2023Focusing on the differences in the catalytic properties of two type I fatty acid synthases FasA and FasB, the fasA gene was disrupted in an oleic acid-producing...
Focusing on the differences in the catalytic properties of two type I fatty acid synthases FasA and FasB, the fasA gene was disrupted in an oleic acid-producing Corynebacterium glutamicum strain. The resulting oleic acid-requiring strain whose fatty acid synthesis depends only on FasB exhibited almost exclusive production (217 mg/L) of palmitic acid (C16:0) from 1% glucose under the conditions supplemented with the minimum concentration of sodium oleate for growth. Plasmid-mediated amplification of fasB led to a 1.47-fold increase in palmitic acid production (320 mg/L), while fasB disruption resulted in no fatty acid production, with excretion of malonic acid (30 mg/L). Next, aiming at conversion of the palmitic acid producer to a producer of palmitoleic acid (POA, C16:1Δ9), we introduced the Pseudomonas nitroreducens Δ9-desaturase genes desBC into the palmitic acid producer. Although this resulted in failure, we noticed the emergence of suppressor mutants that exhibited the oleic acid-non-requiring phenotype. Production experiments revealed that one such mutant M-1 undoubtedly produced POA (17 mg/L) together with palmitic acid (173 mg/L). Whole genomic analysis and subsequent genetic analysis identified the suppressor mutation of strain M-1 as a loss-of-function mutation for the DtxR protein, a global regulator of iron metabolism. Considering that DesBC are both iron-containing enzymes, we investigated the conditions for increased iron availability to improve the DesBC-dependent conversion ratio of palmitic acid to POA. Eventually, supplementation of both hemin and the iron chelator protocatechuic acid in the engineered strain dramatically enhanced POA production to 161 mg/L with a conversion ratio of 80.1%. Cellular fatty acid analysis revealed that the POA-producing cells were really equipped with unnatural membrane lipids comprised predominantly of palmitic acid (85.1% of total cellular fatty acids), followed by non-native POA (12.4%).
Topics: Palmitic Acid; Corynebacterium glutamicum; Metabolic Engineering; Fatty Acids; Iron
PubMed: 37286071
DOI: 10.1016/j.ymben.2023.06.002 -
Chinese Medicine Nov 2021Codonopsis pilosula, an important medicinal plant, can accumulate certain metabolites under moderate drought stress. Endophytes are involved in the metabolite...
BACKGROUND
Codonopsis pilosula, an important medicinal plant, can accumulate certain metabolites under moderate drought stress. Endophytes are involved in the metabolite accumulations within medicinal plants. It is still unknown that the endophytes of C. pilosula are associated with the accumulations of metabolites. This study aims to investigate the promoting effect of endophytes on the accumulations of active substances in C. pilosula under drought stress.
METHODS
High-performance liquid chromatography and high-throughput sequencing technology were performed to investigate changes in the contents of secondary metabolite and endophyte abundances of C. pilosula under drought stress, respectively. Spearman's correlation analysis was further conducted to identify the endophytic biomarkers related to accumulations of pharmacodynamic compounds. Culture-dependent experiments were performed to confirm the functions of endophytes in metabolite accumulations.
RESULTS
The distribution of pharmacological components and diversity and composition of endophytes showed tissue specificity within C. pilosula. The contents of lobetyolin, syringin, and atractylolide III in C. pilosula under drought stress were increased by 8.47%‒86.47%, 28.78%‒230.98%, and 32.17%‒177.86%, respectively, in comparison with those in untreated groups. The Chao 1 and Shannon indices in different parts of drought-stressed C. pilosula increased compared with those in untreated parts. The composition of endophytic communities in drought treatment parts of C. pilosula was different from that in control parts. A total of 226 microbial taxa were identified as potential biomarkers, of which the abundances of 42 taxa were significantly and positively correlated to the pharmacodynamic contents. Culture-dependent experiments confirmed that the contents of lobetyolin and atractylolide III were increased by the application of Epicoccum thailandicum, Filobasidium magnum, and Paraphoma rhaphiolepidis at the rates of 11.12%‒46.02%, and that the content of syringin was increased by Pseudomonas nitroreducens at the rates of 118.61%‒119.36%.
CONCLUSIONS
Certain endophytes participated in the accumulations of bioactive metabolites, which provided a scientific evidence for the development and application of microorganisms to improve the quality of traditional Chinese medicine.
PubMed: 34809641
DOI: 10.1186/s13020-021-00533-z -
Environmental Technology Feb 2022N-acyl homoserine lactones (AHLs) based quorum sensing controls various phenotype expressions, including biofilm formation, hence its interruption is considered to be an...
N-acyl homoserine lactones (AHLs) based quorum sensing controls various phenotype expressions, including biofilm formation, hence its interruption is considered to be an ideal option for membrane biofouling control. Bead entrapped quorum quenching bacteria was reported to be an efficient approach for degradation of signal molecules in recent years. In the present study, we investigated the potential of quorum quenching (QQ) bacteria immobilised magnetic nanocomposite beads (IMN) in degradation of signalling molecule, n-hexanoyl homoserine lactone (C6-HSL). Three QQ bacteria, named JYQ2, JYQ3 and JYQ4 isolated from dairy industry waste activated sludge (WAS) were immobilised in the magnetic nanocomposite (IMN) beads. The scanning electron microscopy (SEM) of the IMN beads has indicated the successful entrapment of QQ bacteria within the alginate matrix. The GC-MS analysis showed that all the QQ bacteria immobilised magnetic nanocomposite (IMN) beads degraded the signalling molecule, n-hexanoyl homoserine lactone (C6-HSL) within 72 h of incubation. The nanocomposite beads containing the QQ bacteria JYQ4 showed the maximum degradation percentage of 97 ± 0.13% leaving a residual HSL of 0.7 mg/L. All the other isolates showed C6-HSL degradation percentage in the range of 87% to 95%. The data suggest the potential of C6-HSL degradation by QQ bacteria IMN beads. Hence, the study offers possibilities of controlling biofilm developed on the membrane surface during wastewater treatment processes.
Topics: 4-Butyrolactone; Bacteria; Magnetic Phenomena; Nanocomposites; Quorum Sensing
PubMed: 32814501
DOI: 10.1080/09593330.2020.1811389 -
Analytical Chemistry Jan 2020Humic substances (HSs) are important electron acceptors and donors in soils and aquifers. The coupling of anoxic nitrogen (N) cycling to the function of HSs as a redox...
Humic substances (HSs) are important electron acceptors and donors in soils and aquifers. The coupling of anoxic nitrogen (N) cycling to the function of HSs as a redox battery, however, remains poorly understood. Mediated electrochemical analysis is an emerging tool to determine the redox properties (i.e., electron donating capacity (EDC), electron accepting capacity (EAC), and redox state) of HS. However, the presence of nitrite (NO), a central intermediate of the N-cycle, interferes with the electrochemical determination of the EAC. To eliminate this interference, we developed a bioassay to remove nitrite in HS samples using the denitrifying bacterium . Cell suspensions of completely removed NO at various concentrations (1, 2, and 5 mM) from humic acid samples (1 g HA/L) of different redox states. As is not able to exchange electrons with dissolved humic acids, the procedure allows an accurate and reliable determination of the EAC of humic acid samples. The proposed method thus opens new perspectives in biogeochemistry to study interactions between HSs and N cycling.
Topics: Electrochemical Techniques; Electrons; Humic Substances; Nitrites; Pseudomonas
PubMed: 31751112
DOI: 10.1021/acs.analchem.9b03683