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Journal of Biochemistry Aug 1982ATPase of 14S dynein, extracted from spermatozoa of the sea urchin, Hemicentrotus pulcherrimus, and partially purified by sucrose density gradient centrifugation, was...
ATPase of 14S dynein, extracted from spermatozoa of the sea urchin, Hemicentrotus pulcherrimus, and partially purified by sucrose density gradient centrifugation, was inhibited non-competitively by palmitoyl CoA at concentrations higher than 20 microns, and was stimulated at concentrations between 2 microns and 10 microns. The effects of palmitoyl CoA on dynein ATPase were reversed by bovine serum albumin (1 mg/ml) and spermine (0.1 and 1 mM). Myristoyl CoA exerted effects similar to those of palmitoyl CoA. Short chain fatty acyl CoAs, such as butyryl CoA, propionyl CoA and acetyl CoA, CoA, Na-palmitate, Na-myristate, and palmitoyl carnitine had hardly any effect on dynein ATPase. Palmitoyl CoA failed to inhibit purified CF1 ATPase from chloroplasts of spinach, ATPase of rat liver mitochondria and alkaline phosphatase from calf intestine.
Topics: Acyl Coenzyme A; Adenosine Triphosphatases; Adenosine Triphosphate; Alkaline Phosphatase; Animals; Chloroplasts; Dyneins; Kinetics; Male; Mitochondria, Liver; Palmitoyl Coenzyme A; Plants; Rats; Sea Urchins; Spermatozoa; Spermine
PubMed: 6215400
DOI: 10.1093/oxfordjournals.jbchem.a133951 -
Journal of Cellular Biochemistry 1984The basal ATPase activity of 30S dynein, whether obtained by extraction of ciliary axonemes with a high (0.5 M NaCl) or low (1 mM Tris-0.1 mM EDTA) ionic strength buffer...
The basal ATPase activity of 30S dynein, whether obtained by extraction of ciliary axonemes with a high (0.5 M NaCl) or low (1 mM Tris-0.1 mM EDTA) ionic strength buffer is increased by NaCl, NaNO3, and Na acetate, with NaNO3 causing the largest increase. The calmodulin-activated ATPase activity of 30S dynein is also increased by addition of NaCl, NaNO3, or Na acetate, but the effects are less pronounced than on basal activity, so that the calmodulin activation ratio (CAR) decreases to 1.0 as salt concentration increases to 0.2 M. These salts also reduce the CAR of 14S dynein ATPase to 1.0 but by strongly inhibiting the calmodulin-activated ATPase activity and only slightly inhibiting the basal activity. Sodium fluoride differs both quantitatively and qualitatively from the other three salts studied. It inhibits the ATPase activity of both 14S and 30S dyneins at concentrations below 5 mM and, by a stronger inhibition of the calmodulin-activated ATPase activities, reduces the CAR to 1.0. Na acetate does not inhibit axonemal ATPase, nor does it interfere with the drop in turbidity caused by ATP and extracts very little protein from the axonemes. NaCl and, especially, NaNO3, cause a slow decrease in A350 of an axonemal suspension and an inhibition of the turbidity response to ATP. NaF, at concentrations comparable to those that inhibit the ATPase activities of the solubilized dyneins, also inhibits axonemal ATPase activity and the turbidity response. Pretreatment of demembranated axonemes with a buffer containing 0.25 M sodium acetate for 5 min followed by extraction for 5 min with a buffer containing 0.5 M NaCl and resolution of the extracted dynein on a sucrose density gradient generally yields a 30S dynein that is activated by calmodulin in a heterogeneous manner, ie, the "light" 30S dynein ATPase fractions are more activated than the "heavy" 30S dynein fractions. These results demonstrate specific anion effects on the basal and calmodulin-activated dynein ATPase activities, on the extractability of proteins from the axoneme, and on the turbidity response of demembranated axonemes to ATP. They also provide a method that frequently yields 30S dynein fractions with ATPase activities that are activated over twofold by added calmodulin.
Topics: Acetates; Acetic Acid; Adenosine Triphosphatases; Animals; Axons; Calmodulin; Cattle; Dyneins; Edetic Acid; Enzyme Activation; Nephelometry and Turbidimetry; Sodium Chloride
PubMed: 6239871
DOI: 10.1002/jcb.240250403 -
Methods in Cell Biology 1995
Topics: Acrylamides; Adenine; Aluminum Compounds; Animals; Bacterial Proteins; Cilia; Cnidarian Venoms; Dyneins; Enzyme Inhibitors; Flagella; Fluorides; Male; Movement; Nickel; Sea Urchins; Sperm Motility; Sperm Tail; Sulfonamides; Vanadates
PubMed: 7476535
DOI: 10.1016/s0091-679x(08)60851-1 -
Methods in Molecular Biology (Clifton,... 2023Cytoplasmic dynein, the largest and most intricate cytoskeletal motor protein, powers the movement of numerous intracellular cargos toward the minus ends of microtubules...
Cytoplasmic dynein, the largest and most intricate cytoskeletal motor protein, powers the movement of numerous intracellular cargos toward the minus ends of microtubules (MT). Despite its essential roles in eukaryotic cells, dynein's molecular mechanism, the regulatory functions of its subunits and accessory proteins, and the consequences of human disease mutations on dynein force generation remain largely unclear. Recent work combining mutagenesis, single-molecule fluorescence, and optical tweezers-based force measurement have provided valuable insights into how dynein's multiple AAA+ ATPase domains regulate dynein's attachment to MTs. Here, we describe detailed protocols for the measurements of the force-dependent dynein-MT detachment rates. We provide updated and optimized protocols for the expression and purification of a tail-truncated single-headed Saccharomyces cerevisiae dynein, for polarity-marked MT polymerization, and for the non-covalent attachment of MTs to cover glass surfaces for the measurement of dynein-MT detachment forces.
Topics: Humans; Cytoplasmic Dyneins; Dyneins; Microtubules; Saccharomyces cerevisiae; Mutagenesis
PubMed: 36602689
DOI: 10.1007/978-1-0716-2958-1_14 -
Journal of Biochemistry Mar 1977Axonemal dynein ATPase [EC 3.6.1.3] was extracted from cilia of sea urchin embryos for a study of its enzymatic properties. Sedimentation analysis on a sucrose density...
Axonemal dynein ATPase [EC 3.6.1.3] was extracted from cilia of sea urchin embryos for a study of its enzymatic properties. Sedimentation analysis on a sucrose density gradient revealed that ATPase activity was associated with the 12S particles. The partially purified 12S enzyme was characterized mainly with regard to the optimum pH, divalent cation and ionic strength requirments and substrate specificity. Comparative investigation of the data obtained indicates that the properties of the present dyneine ATPase resemble those of other dynein(-like) ATPase hitherto reported. In addition, the possible relationship among dyneins within a single species, in particular between the ciliary dynein and cytoplasmic dynein-like ATPase, is discussed.
Topics: Adenosine Triphosphatases; Animals; Calcium; Cilia; Dyneins; Embryo, Nonmammalian; Enzyme Activation; Female; Hydrogen-Ion Concentration; Kinetics; Magnesium; Molecular Weight; Osmolar Concentration; Potassium Chloride; Sea Urchins
PubMed: 16878
DOI: 10.1093/oxfordjournals.jbchem.a131509 -
The Journal of Cell Biology Mar 1983Dynein has been examined by scanning transmission electron microscopy (STEM). Samples of 30S dynein from tetrahymena cilia were applied to carbon films and either were...
Dynein has been examined by scanning transmission electron microscopy (STEM). Samples of 30S dynein from tetrahymena cilia were applied to carbon films and either were freeze- dried and examined as unstained, unfixed specimens, or were negatively stained with uranyl sulfate. A totally new image of the dynein molecule was revealed showing three globular heads connected by three separate strands to a common base. Two of the heads appeared to be identical and exhibited a diameter of 10 nm while the third head was somewhat larger (approximately 12 nm). The overall length of the particle was 35 nm. Mass analysis, based upon the integration of electron scattering intensities for unstained particles, gave a molecular weight of 1.95 (+/-)0.24) megadaltons. Mass per unit length analysis was performed using bovine brain microtubules decorated with dynein under conditions where the dynein shows a linear repeat of 24 nm with seven dynein molecules surrounding a microtubule made up of 14 protofilaments. Undecorated microtubules gave a molecular weight per unit length of 21,000+/-1,900 daltons/A, compared to a value of 84,400+/-2,200 daltons/A for the fully decorated microtubules. Taken together, these data give a molecular weight of 2.17 (+/- 0.14) megadaltons per dynein molecule, in agreement with measurements on the isolated particles. Mass analysis of individual globular heads observed in isolated particles gave a molecular weight distribution with a mean of 416+/- 76 kdaltons. These data could also be viewed as the sum of two populations of head with two-thirds of the heads at approximately 400 kdaltons and one-third at approximately 550 kdaltons, although more precise data will be required to distinguish two classes of heads with confidence. The mass of the dynein-microtubule complex as a function of distance from the midline of the particle was analysed to distinguish which end of the dynein molecule was bound to the microtubule. The projected mass distribution was consistent with a model where the three dynein heads were oriented toward the microtubule and clearly not consistent with the opposite orientation. These data indicate that the three globular heads form the ATP-sensitive site in this heterologous dynein-microtubule system and suggest that the rootlike base of the dynein molecule forms the structural attachment site to the A-subfiber of the outer doublet in cilia and flagella. The structure and function of the dynein are dicussed in terms of these new results.
Topics: Adenosine Triphosphatases; Animals; Binding Sites; Chemical Phenomena; Chemistry; Dyneins; Microscopy, Electron, Scanning; Microtubules; Molecular Weight; Protein Conformation; Structure-Activity Relationship; Tetrahymena
PubMed: 6220019
DOI: 10.1083/jcb.96.3.669 -
Journal of Biochemistry Jun 1983The amounts of ATP and ADP bound to 21S dynein during the ATPase reaction were measured in the presence of 2.83 mg/ml 21S dynein, 2 mM PEP, 4 mg/ml PK, 0.1 M KCl, 5 mM...
The amounts of ATP and ADP bound to 21S dynein during the ATPase reaction were measured in the presence of 2.83 mg/ml 21S dynein, 2 mM PEP, 4 mg/ml PK, 0.1 M KCl, 5 mM MgCl2, 1 mM DTT, 0.1 mM PMSF, 50% [2-3H]glycerol, and 20 mM imidazole at pH 7.0 and 0 degrees C. The maximum amounts of ATP and ADP bound to 21S dynein were 0.29 and 0.55 mol/(10(6) g protein), respectively. The dissociation constants of ATP for the ATP and ADP binding (4 microM) were almost equal to the Km value (3.7 microM) of dynein-ATPase in the steady state. The amount of bound ADP during the initial phase showed an overshoot, which reached 0.6-0.8 mol/10(6) g protein at 5 s, then decreased to the steady state level within 20 s. Furthermore, the rate of TCA-Pi liberation during the initial 5 s was 6 times the steady-state rate. The apparent Pi-burst size, estimated by extrapolating the steady-state Pi liberation to zero time, was 1.33 mol/(10(6) g protein). The true Pi-burst size was calculated to be 1.56 mol/(10(6) g protein) by correcting for the effect of Pi liberation at steady state. All these findings could be explained quantitatively by the following reaction scheme for 21S dynein ATPase in the presence of glycerol: (formula; see text) where K1 = 25.5 microM, and k2, k3, and k4 were 0.39, 0.21, and 0.11 s-1, respectively.
Topics: Adenosine Diphosphate; Adenosine Triphosphatases; Adenosine Triphosphate; Dyneins; Glycerol; Male; Phosphates; Sea Urchins; Spermatozoa
PubMed: 6224779
DOI: 10.1093/oxfordjournals.jbchem.a134296 -
European Journal of Biochemistry Jun 1992The ATPase activity of 14S dynein was activated by the presence of microtubule-associated-protein-free microtubules. The activation was 2.5-3.5 fold at 10 mg...
The ATPase activity of 14S dynein was activated by the presence of microtubule-associated-protein-free microtubules. The activation was 2.5-3.5 fold at 10 mg microtubule/ml, and the activity increased further with increasing microtubule concentration. The microtubule-14S-dynein complex, microtubule bundles with 14S dynein, was treated with a zero-length chemical cross-linker, 1-ethyl-3-[3-(dimethylamino)propyl]carbodiimide (EDC). The ATPase activity of the complex responded to EDC in a biphasic, concentration-dependent manner and, at most, it was enhanced 5-10 fold. The complex treated with EDC was no longer unbundled by addition of ATP, as revealed by electron-microscopic observation. Several ATP analogues, which support in vitro microtubule translocation mediated by 14S dynein, were turned over faster by this mechanochemical enzyme in the presence of microtubules than in their absence. However, some ATP analogues which do not support the translocation were also turned over faster in the presence of microtubules. Thus, microtubule-dynein motility and substrate-turnover activation are not tightly coupled, which indicates that all three major motor systems, actin- heavy-meromyosin, microtubule-kinesin [Shimizu, T., Furusawa, K., Ohashi, S., Toyoshima, Y. Y., Okuno, M., Malik, F. & Vale, R. D. (1991) J. Cell Biol. 112, 1189-1197] and microtubule-dynein, have this characteristic property in common.
Topics: Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Cilia; Cross-Linking Reagents; Dyneins; Enzyme Activation; Ethyldimethylaminopropyl Carbodiimide; Microscopy, Electron; Microtubules; Tetrahymena thermophila
PubMed: 1535044
DOI: 10.1111/j.1432-1033.1992.tb17000.x -
Nature Structural & Molecular Biology Sep 2019Dynein-2 assembles with polymeric intraflagellar transport (IFT) trains to form a transport machinery that is crucial for cilia biogenesis and signaling. Here we...
Dynein-2 assembles with polymeric intraflagellar transport (IFT) trains to form a transport machinery that is crucial for cilia biogenesis and signaling. Here we recombinantly expressed the ~1.4-MDa human dynein-2 complex and solved its cryo-EM structure to near-atomic resolution. The two identical copies of the dynein-2 heavy chain are contorted into different conformations by a WDR60-WDR34 heterodimer and a block of two RB and six LC8 light chains. One heavy chain is steered into a zig-zag conformation, which matches the periodicity of the anterograde IFT-B train. Contacts between adjacent dyneins along the train indicate a cooperative mode of assembly. Removal of the WDR60-WDR34-light chain subcomplex renders dynein-2 monomeric and relieves autoinhibition of its motility. Our results converge on a model in which an unusual stoichiometry of non-motor subunits controls dynein-2 assembly, asymmetry, and activity, giving mechanistic insight into the interaction of dynein-2 with IFT trains and the origin of diverse functions in the dynein family.
Topics: Cryoelectron Microscopy; Dyneins; Humans; Protein Conformation; Protein Multimerization; Protein Transport
PubMed: 31451806
DOI: 10.1038/s41594-019-0286-y -
Biochimica Et Biophysica Acta Oct 1977The ATPase (EC 3.6.1.3) activity of 30 S dynein from Tetrahymena cilia was remarkably stimulated by porcine brain tubulin at pH 10. The activity increased with...
The ATPase (EC 3.6.1.3) activity of 30 S dynein from Tetrahymena cilia was remarkably stimulated by porcine brain tubulin at pH 10. The activity increased with increasing concentration of tubulin until the molar ratio of tubulin dimer to 30 S dynein reached approx. 10. The optimum of the ATPase activity of 30 S dynein in the presence of tubulin was 1-2 mM for MgCl2 and 2 mM for CaCl2. Increasing ionic strength gradually inhibited the stimulation effects of tubulin. Activation energies of 30 S dynein in the presence and absence of tubulin were almost the same. At the temperatures beyond 25 degrees C stimulation effects of tubulin disappeared. ATP was a specific substrate even in the presence of tubulin. In kinetic investigations parallel reciprocal plots were observed in a constant ratio of divalent cations to ATP of 2, indicating that tubulin was less tightly bound to 30 S dynein in the presence of ATP than the absence. The similar results were obtained at pH 8.2. 14 S dynein and the 12 S fragment which have poor ability to recombine with outer fibers were also activated with brain tubulin.
Topics: Adenosine Triphosphatases; Adenosine Triphosphate; Animals; Brain; Calcium; Dyneins; Enzyme Activation; Glycoproteins; Hydrogen-Ion Concentration; Kinetics; Magnesium; Microtubules; Molecular Weight; Potassium Chloride; Substrate Specificity; Swine; Tetrahymena pyriformis; Thermodynamics; Tubulin
PubMed: 20950
DOI: 10.1016/0005-2728(77)90188-8