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Plant, Cell & Environment Apr 2021Plant population density is an important variable in agronomy and forestry and offers an experimental way to better understand plant-plant competition. We made a... (Review)
Review
Plant population density is an important variable in agronomy and forestry and offers an experimental way to better understand plant-plant competition. We made a meta-analysis of responses of even-aged mono-specific stands to population density by quantifying for 3 stand and 33 individual plant variables in 334 experiments how much both plant biomass and phenotypic traits change with a doubling in density. Increasing density increases standing crop per area, but decreases the mean size of its individuals, mostly through reduced tillering and branching. Among the phenotypic traits, stem diameter is negatively affected, but plant height remains remarkably similar, partly due to an increased stem length-to-mass ratio and partly by increased allocation to stems. The reduction in biomass is caused by a lower photosynthetic rate, mainly due to shading of part of the foliage. Total seed mass per plant is also strongly reduced, marginally by lower mass per seed, but mainly because of lower seed numbers. Plants generally have fewer shoot-born roots, but their overall rooting depth seems hardly affected. The phenotypic plasticity responses to high densities correlate strongly with those to low light, and less with those to low nutrients, suggesting that at high density, shading affects plants more than nutrient depletion.
Topics: Biomass; Plant Development; Plant Physiological Phenomena; Plants; Population Density
PubMed: 33280135
DOI: 10.1111/pce.13968 -
Plant Science : An International... Aug 2018Plant synthetic biology is a rapidly emerging field that aims to engineer genetic circuits to function in plants with the same reliability and precision as electronic... (Review)
Review
Plant synthetic biology is a rapidly emerging field that aims to engineer genetic circuits to function in plants with the same reliability and precision as electronic circuits. These circuits can be used to program predictable plant behavior, producing novel traits to improve crop plant productivity, enable biosensors, and serve as platforms to synthesize chemicals and complex biomolecules. Herein we introduce the importance of developing orthogonal plant parts and the need for quantitative part characterization for mathematical modeling of complex circuits. In particular, transfer functions are important when designing electronic-like genetic controls such as toggle switches, positive/negative feedback loops, and Boolean logic gates. We then discuss potential constraints and challenges in synthetic regulatory circuit design and integration when using plants. Finally, we highlight current and potential plant synthetic regulatory circuit applications.
Topics: Gene Regulatory Networks; Genetic Engineering; Models, Theoretical; Plants; Synthetic Biology
PubMed: 29907304
DOI: 10.1016/j.plantsci.2018.04.005 -
Molecules (Basel, Switzerland) Feb 2022Traditionally, medicinal plants have long been used as a natural therapy. Plant-derived extracts or phytochemicals have been exploited as food additives and for curing... (Review)
Review
Traditionally, medicinal plants have long been used as a natural therapy. Plant-derived extracts or phytochemicals have been exploited as food additives and for curing many health-related ailments. The secondary metabolites produced by many plants have become an integral part of human health and have strengthened the value of plant extracts as herbal medicines. To fulfil the demand of health care systems, food and pharmaceutical industries, interest in the cultivation of precious medicinal plants to harvest bio-active compounds has increased considerably worldwide. To achieve maximum biomass and yield, growers generally apply chemical fertilizers which have detrimental impacts on the growth, development and phytoconstituents of such therapeutically important plants. Application of beneficial rhizosphere microbiota is an alternative strategy to enhance the production of valuable medicinal plants under both conventional and stressed conditions due to its low cost, environmentally friendly behaviour and non-destructive impact on fertility of soil, plants and human health. The microbiological approach improves plant growth by various direct and indirect mechanisms involving the abatement of various abiotic stresses. Given the negative impacts of fertilizers and multiple benefits of microbiological resources, the role of plant growth promoting rhizobacteria (PGPR) in the production of biomass and their impact on the quality of bio-active compounds (phytochemicals) and mitigation of abiotic stress to herbal plants have been described in this review. The PGPR based enhancement in the herbal products has potential for use as a low cost phytomedicine which can be used to improve health care systems.
Topics: Bacteria; Bioprospecting; Crops, Agricultural; Humans; Phytochemicals; Plants, Medicinal; Rhizosphere; Soil Microbiology
PubMed: 35209196
DOI: 10.3390/molecules27041407 -
Bioscience Reports Oct 2020Plants integrate a variety of biotic and abiotic factors for optimal growth in their given environment. While some of these responses are local, others occur distally.... (Review)
Review
Plants integrate a variety of biotic and abiotic factors for optimal growth in their given environment. While some of these responses are local, others occur distally. Hence, communication of signals perceived in one organ to a second, distal part of the plant and the coordinated developmental response require an intricate signaling system. To do so, plants developed a bipartite vascular system that mediates the uptake of water, minerals, and nutrients from the soil; transports high-energy compounds and building blocks; and traffics essential developmental and stress signals. One component of the plant vasculature is the phloem. The development of highly sensitive mass spectrometry and molecular methods in the last decades has enabled us to explore the full complexity of the phloem content. As a result, our view of the phloem has evolved from a simple transport path of photoassimilates to a major highway for pathogens, hormones and developmental signals. Understanding phloem transport is essential to comprehend the coordination of environmental inputs with plant development and, thus, ensure food security. This review discusses recent developments in its role in long-distance signaling and highlights the role of some of the signaling molecules. What emerges is an image of signaling paths that do not just involve single molecules but rather, quite frequently an interplay of several distinct molecular classes, many of which appear to be transported and acting in concert.
Topics: Adaptation, Physiological; Phloem; Plant Development; Plants; Signal Transduction; Stress, Physiological
PubMed: 32955092
DOI: 10.1042/BSR20193329 -
Current Opinion in Plant Biology Oct 2022Regulated or programmed cell death (RCD or PCD) is a fundamental biological principle integral to a considerable variety of functions in multicellular organisms. In... (Review)
Review
Regulated or programmed cell death (RCD or PCD) is a fundamental biological principle integral to a considerable variety of functions in multicellular organisms. In plants, different PCD processes are part of biotic and abiotic stress responses, but also occur as an essential aspect of unperturbed plant development. PCD is particularly abundant during plant reproduction, eliminating unwanted or no longer needed cells, tissues, or organs in a precisely controlled manner. Failure in reproductive PCD can have detrimental consequences for plant reproduction. Here we shed a light on the latest research into PCD mechanisms in plant reproduction from sex determination over sporogenesis to pollination and fertilization.
Topics: Apoptosis; Fertilization; Plant Development; Plants; Reproduction
PubMed: 35963096
DOI: 10.1016/j.pbi.2022.102271 -
Annual Review of Entomology Jan 2018Tritrophic interactions between plants, herbivores, and their natural enemies are an integral part of all terrestrial ecosystems. Herbivore-induced plant volatiles... (Review)
Review
Tritrophic interactions between plants, herbivores, and their natural enemies are an integral part of all terrestrial ecosystems. Herbivore-induced plant volatiles (HIPVs) play a key role in these interactions, as they can attract predators and parasitoids to herbivore-attacked plants. Thirty years after this discovery, the ecological importance of the phenomena is widely recognized. However, the primary function of HIPVs is still subject to much debate, as is the possibility of using these plant-produced cues in crop protection. In this review, we summarize the current knowledge on the role of HIPVs in tritrophic interactions from an ecological as well as a mechanistic perspective. This overview focuses on the main gaps in our knowledge of tritrophic interactions, and we argue that filling these gaps will greatly facilitate efforts to exploit HIPVs for pest control.
Topics: Agriculture; Animals; Food Chain; Herbivory; Insecta; Plants; Volatile Organic Compounds
PubMed: 29324043
DOI: 10.1146/annurev-ento-020117-043507 -
Methods in Molecular Biology (Clifton,... 2017Bioinformatic tools have become part of the way plant researchers undertake investigations. Large data sets encompassing genomes, transcriptomes, proteomes, epigenomes,...
Bioinformatic tools have become part of the way plant researchers undertake investigations. Large data sets encompassing genomes, transcriptomes, proteomes, epigenomes, and other "-omes" that have been generated in the past decade may be easily accessed with such tools, such that hypotheses may be generated at the click of a mouse. In this chapter, we'll cover the use of bioinformatic tools available at the Bio-Analytic Resource for Plant Biology at http://bar.utoronto.ca for exploring gene expression and coexpression patterns, undertaking promoter analyses, performing functional classification enrichment analyses for sets of genes, and examining protein-protein interactions. We also touch on some newer bioinformatic tools that allow integration of data from several sources for improved hypothesis generation, both for Arabidopsis and translationally. Most of the data sets come from Arabidopsis, but useful BAR tools for other species will be mentioned where appropriate.
Topics: Computational Biology; Databases, Genetic; Gene Expression Regulation, Plant; Genomics; Plants; Proteomics; Software; User-Computer Interface; Web Browser
PubMed: 27987167
DOI: 10.1007/978-1-4939-6658-5_6 -
The Plant Journal : For Cell and... Jan 2022Originally conceived as harmful metabolic byproducts, reactive oxygen species (ROS) are now recognized as an integral part of numerous cellular programs. Thanks to their... (Review)
Review
Originally conceived as harmful metabolic byproducts, reactive oxygen species (ROS) are now recognized as an integral part of numerous cellular programs. Thanks to their diverse physicochemical properties, compartmentalized production, and tight control exerted by the antioxidant machinery they activate signaling pathways that govern plant growth, development, and defense. Excessive ROS levels are often driven by adverse changes in environmental conditions, ultimately causing oxidative stress. The associated negative impact on cellular constituents have been a major focus of decade-long research efforts to improve the oxidative stress resilience by boosting the antioxidant machinery in model and crop species. We highlight the role of enzymatic and non-enzymatic antioxidants as integral factors of multiple signaling cascades beyond their mere function to prevent oxidative damage under adverse abiotic stress conditions.
Topics: Antioxidants; Droughts; Oxidation-Reduction; Oxidative Stress; Plant Physiological Phenomena; Plants; Reactive Oxygen Species; Signal Transduction; Stress, Physiological
PubMed: 34519111
DOI: 10.1111/tpj.15493 -
Physiologia Plantarum Feb 2008Stress in plants could be defined as any change in growth condition(s) that disrupts metabolic homeostasis and requires an adjustment of metabolic pathways in a process... (Review)
Review
Stress in plants could be defined as any change in growth condition(s) that disrupts metabolic homeostasis and requires an adjustment of metabolic pathways in a process that is usually referred to as acclimation. Metabolomics could contribute significantly to the study of stress biology in plants and other organisms by identifying different compounds, such as by-products of stress metabolism, stress signal transduction molecules or molecules that are part of the acclimation response of plants. These could be further tested by direct measurements, correlated with changes in transcriptome and proteome expression and confirmed by mutant analysis. In this review, we will discuss recent application of metabolomics and system biology to the area of plant stress response. We will describe approaches such as metabolic profiling and metabolic fingerprinting as well as combination of different 'omics' platforms to achieve a holistic view of the plant response stress and conduct detailed pathway analysis.
Topics: Computational Biology; Gene Expression Profiling; Gene Expression Regulation, Plant; Mutation; Plant Development; Plants; Proteomics; Systems Biology
PubMed: 18251861
DOI: 10.1111/j.1399-3054.2007.01025.x -
Computational Intelligence and... 2022At present, China is at an essential stage in the progress of social civilisation. At the same time, China's current economic level is developing rapidly and the level...
At present, China is at an essential stage in the progress of social civilisation. At the same time, China's current economic level is developing rapidly and the level of urbanisation is also increasing. However, the uncontrolled development of urban space and excessive consumption of land resources have led to many urban ecological and environmental problems. As a result, there is an urgent need to improve the urban habitat. Plant landscaping is an important part of the urban environment. In addition, plant landscaping is also a crucial part of the visual arts and plays a key role in the shaping of urban spaces. In the context of the urban construction boom, people are increasingly demanding quality in the urban environment. Spatial scale, as a vital factor influencing the visual effect of planting, is gradually becoming a focus of landscape design. Urban greening based on plant landscape can not only improve the urban ecological environment and enhance people's quality of life but also resolve the contradiction between the demand for urban green space and the continuous reduction of urban greening land. Therefore, plant landscaping is recognised as a key step towards global sustainable development. However, according to current research and application practice, the development of urban greenery is limited and hindered by the value of plant landscaping and its applications. In addition, no comprehensive theoretical system has yet been established at the plant scale. In other words, there are still problems of scale in plant landscaping, such as unreasonable density, disproportion, and unclear hierarchy. Therefore, this paper begins with the definition of plant spatial scale in the city and analyses plant spatial types and scale characteristics from multiple perspectives, so as to establish an overall knowledge of plant landscaping. After that, through a study of the current situation of plant landscaping in cities, a quantitative analysis of the visual scale of plant space in urban squares is carried out to address the issues of plant scale design in this research. The focus of the analysis is on the scale of plants in relation to related elements. Furthermore, this study explores the influence of visual aesthetic scale and psychological scale on planting based on the functional scale of plant elements. Finally, the above quantitative analyses are applied to derive some relative data criteria and to summarise the design strategies for the spatial scale of planting in the city. The findings of this study can provide some guiding suggestions and references for the future construction of urban greenery, thus promoting the orderly development of plant landscaping in cities.
Topics: China; Cities; Environment; Gardens; Humans; Plants; Quality of Life
PubMed: 35875741
DOI: 10.1155/2022/2430067