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Scientific Reports Jun 2024Haploid induction (HI) holds great promise in expediting the breeding process in onion, a biennial cross-pollinated crop. We used the CENH3-based genome elimination...
Haploid induction (HI) holds great promise in expediting the breeding process in onion, a biennial cross-pollinated crop. We used the CENH3-based genome elimination technique in producing a HI line in onion. Here, we downregulated AcCENH3 using the RNAi approach without complementation in five independent lines. Out of five events, only three could produce seeds upon selfing. The progenies showed poor seed set and segregation distortion, and we were unable to recover homozygous knockdown lines. The knockdown lines showed a decrease in accumulation of AcCENH3 transcript and protein in leaf tissue. The decrease in protein content in transgenic plants was correlated with poor seed set. When the heterozygous knockdown lines were crossed with wild-type plants, progenies showed HI by genome elimination of the parental chromosomes from AcCENH3 knockdown lines. The HI efficiency observed was between 0 and 4.63% in the three events, and it was the highest (4.63%) when E1 line was crossed with wildtype. Given the importance of doubled haploids in breeding programmes, the findings from our study are poised to significantly impact onion breeding.
Topics: Onions; RNA Interference; Plants, Genetically Modified; Haploidy; Plant Proteins; Gene Expression Regulation, Plant; Down-Regulation; Plant Breeding; Gene Knockdown Techniques
PubMed: 38914600
DOI: 10.1038/s41598-024-64432-7 -
European Annals of Allergy and Clinical... Jun 2024Grass and olive pollens have overlapping pollination periods and are common allergens in the Iberian Peninsula. The objective is to determine the sensitization pattern...
Grass and olive pollens have overlapping pollination periods and are common allergens in the Iberian Peninsula. The objective is to determine the sensitization pattern to major Phleum pratense and Olea europaea pollens in the Portuguese population with pollen allergic rhinitis (AR) using molecular allergen diagnosis (MAD). Seasonal AR patients (≥ 12 years), with positive skin prick tests (SPT) to Phleum and Olea were recruited from 16 centers. Using ALEX2, specific IgE to Phl p1, Phl p2, Phl p5, Phl p6, Phl p7, Phl p 12, Ole e1, Ole e7 and Ole e9 were determined. Immunoblotting of Olea allergic patients was performed. Included 175 patients (55.4% female; mean age 31.6 ± 13.3 years; 85.7% adults; 40% asthmatic, Coast 28%/Inland 72% and North 29.1%/Centre 20.6%/South 50.3%). Considering Phleum MAD, 85.7% were sensitized to Phl p1, 45.7% to Phl p2, 50.3% to Phl p5, 45.7%, to Phl p6, 10.9% to Phl p7 and 22.9% to Phl p12. Sensitization to Ole e1 was found in 56.6%, to Ole e7 in 1.7% and Ole e9 in 3.4% patients. Sensitization to Phl p7 was more frequent in asthmatics (17.4% vs 6.6%; p = 0.044). Sensitization to Phl p5, Phl p6, Phl p12 and Ole e1 was more frequent in inland. Regarding sensitization patterns: 53.1% patients were sensitized to both species genuine´ sIgE, 38.3% to Phleum and 3.4% only to Olea species' sIgE. Immunoblotting of Olea allergic patients showed a high intensity band that may correspond to Ole e12. MAD showed "genuine" Grass and Olea sensitization in approximately 50% of our patients.
PubMed: 38913398
DOI: 10.23822/EurAnnACI.1764-1489.347 -
Molecular Plant Jun 2024
PubMed: 38907524
DOI: 10.1016/j.molp.2024.06.011 -
Physical Review. E May 2024A range of systems across the social and natural sciences generate data sets consisting of interactions between two distinct categories of items at various instances in...
A range of systems across the social and natural sciences generate data sets consisting of interactions between two distinct categories of items at various instances in time. Online shopping, for example, generates purchasing events of the form (user, product, time of purchase), and mutualistic interactions in plant-pollinator systems generate pollination events of the form (insect, plant, time of pollination). These data sets can be meaningfully modeled as temporal hypergraph snapshots in which multiple items within one category (i.e., online shoppers) share a hyperedge if they interacted with a common item in the other category (i.e., purchased the same product) within a given time window, allowing for the application of hypergraph analysis techniques. However, it is often unclear how to choose the number and duration of these temporal snapshots, which have a strong influence on the final hypergraph representations. Here we propose a principled nonparametric solution to this problem by extracting temporal hypergraph snapshots that optimally capture structural regularities in temporal event data according to the minimum description length principle. We demonstrate our methods on real and synthetic data sets, finding that they can recover planted artificial hypergraph structure in the presence of considerable noise and reveal meaningful activity fluctuations in human mobility data.
Topics: Time Factors; Models, Theoretical; Humans
PubMed: 38907453
DOI: 10.1103/PhysRevE.109.054306 -
Scientific Reports Jun 2024As natural landscapes are modified and converted into simplified agricultural landscapes, the community composition and interactions of organisms persisting in these...
As natural landscapes are modified and converted into simplified agricultural landscapes, the community composition and interactions of organisms persisting in these modified landscapes are altered. While many studies examine the consequences of these changing interactions for crops, few have evaluated the effects on wild plants. Here, we examine how pollinator and herbivore interactions affect reproductive success for wild resident and phytometer plants at sites along a landscape gradient ranging from natural to highly simplified. We tested the direct and indirect effects of landscape composition on plant traits and reproduction mediated by insect interactions. For phytometer plants exposed to herbivores, we found that greater landscape complexity corresponded with elevated herbivore damage, which reduced total flower production but increased individual flower size. Though larger flowers increased pollination, the reduction in flowers ultimately reduced plant reproductive success. Herbivory was also higher in complex landscapes for resident plants, but overall damage was low and therefore did not have a cascading effect on floral display and reproduction. This work highlights that landscape composition directly affects patterns of herbivory with cascading effects on pollination and wild plant reproduction. Further, the absence of an effect on reproduction for resident plants suggests that they may be adapted to their local insect community.
Topics: Herbivory; Flowers; Pollination; Animals; Reproduction; Agriculture; Insecta; Crops, Agricultural
PubMed: 38906942
DOI: 10.1038/s41598-024-65352-2 -
Plant Physiology Jun 2024Body axis establishment is one of the earliest patterning events in plant embryogenesis. Asymmetric zygote division is critical for apical-basal axis formation in...
Body axis establishment is one of the earliest patterning events in plant embryogenesis. Asymmetric zygote division is critical for apical-basal axis formation in Arabidopsis (Arabidopsis thaliana). However, how the orientation of the cell division plane is regulated and its relation to apical-basal axis establishment and proper position of embryos in grasses remain poorly understood. By characterizing mutants of 3 rice (Oryza sativa) WUSCHEL HOMEOBOX9 (WOX9) genes, whose paralogs in Arabidopsis play essential roles in zygotic asymmetric cell division and cell fate determination, we found 2 kinds of independent embryonic defects: topsy-turvy embryos, in which apical-basal axis twists from being parallel to the longitudinal axis of the seed to being perpendicular; and organ-less embryos. In contrast to their Arabidopsis orthologs, OsWOX9s displayed dynamic distribution during embryo development. Both DWT1/OsWOX9A and DWL2/WOX9C play major roles in the apical-basal axis formation and initiation of stem cells. In addition, DWT1 has a distinct function in regulating the first few embryonic cell divisions to ensure the correct orientation of the embryo in the ovary. In summary, DWT1 acts in 2 steps during rice embryo pattern formation: the initial zygotic division, and with DWL2 to establish the main body axes and stem cell fate 2 to 3 d after pollination.
PubMed: 38905146
DOI: 10.1093/plphys/kiae318 -
Evolutionary Applications Jun 2024Land-use change and habitat fragmentation are threats to biodiversity. The decrease in available habitat, increase in isolation, and mating within populations can lead...
Land-use change and habitat fragmentation are threats to biodiversity. The decrease in available habitat, increase in isolation, and mating within populations can lead to elevated inbreeding, lower genetic diversity, and poor fitness. Here we investigate the genetics of two rare and threatened plant species, and , and we compare them to a widespread congener . We also report the first phylogenetic study of the genus (Apocynaceae), including 10 of the 17 taxa and multiple sampling locations, to understand species relationships. We used a double digest restriction-site associated DNA sequencing (ddRADseq) approach to investigate the genetic diversity and gene flow of each species and to create a maximum likelihood phylogeny. The ddRADseq data was mapped to a reference genome to separate out the chloroplast and nuclear markers for population genetic analysis. Our results show that genetic diversity and inbreeding were low across all three species. The chloroplast and nuclear dataset in were highly structured, whereas they showed no structure for , while lacked structure for nuclear data but not chloroplast. Phylogenetic results revealed that is distinct and sister to , and together they are distantly related to . Our results demonstrated that evolutionary history and contemporary ecological processes largely influences genetic diversity within . Interestingly, we show that in there was significant structure despite being pollinated by large, bodied hawkmoths that are known to be able to carry pollen long distances, suggesting that other factors are contributing to the structure observed among populations. Conservation efforts should focus on protecting all of the populations, as they contain unique genetic diversity, and a protection plan for needs to be established due to its limited distribution.
PubMed: 38903246
DOI: 10.1111/eva.13736 -
Annals of Botany Jun 2024
Strategies of flowering plants to avoid pollen collection by undesirable flower visitors. A commentary on 'High toxin concentration in pollen may deter collection by bees in butterfly-pollinated Rhododendron molle'.
PubMed: 38902985
DOI: 10.1093/aob/mcae088 -
Molecular Plant Jun 2024Xenia, the phenomenon in which the pollen genotype directly affects the phenotypic characteristics of the maternal tissues (i.e., fruit ripening), has applications in...
Xenia, the phenomenon in which the pollen genotype directly affects the phenotypic characteristics of the maternal tissues (i.e., fruit ripening), has applications in crop production and breeding. However, the underlying molecular mechanism has yet to be elucidated. Here, we investigated whether mobile mRNAs from the pollen affect the ripening and quality-related characteristics of the fruit using cross-pollination between distinct Malus domestica (apple) cultivars. We demonstrated that hundreds of mobile mRNAs originating from the seeds are delivered to the fruit. We also found that the movement of one of these mRNAs, ACC oxidase 3 (MdACO3), is coordinated with fruit ripening. Salicylic acid treatment, which can cause plasmodesmal closure, blocks MdACO3 movement, indicating that MdACO3 transcripts may move through plasmodesmata. To assess the role of mobile MdACO3 transcripts in apple fruit, we created MdACO3-GFP-expressing apple seeds using MdACO3-GFP-overexpressing pollen for pollination and showed that MdACO3 transcripts in the transgenic seeds move to the flesh where they regulate fruit ripening. Furthermore, we demonstrated that MdACO3 can be transported from the seeds to fruit in the fleshy-fruited species tomato and strawberry. These results underscore the potential of mobile mRNAs from seeds to influence fruit characteristics, providing an explanation for the xenia phenomenon. Notably, our findings highlight the feasibility of leveraging diverse pollen genomic resources, without resorting to genome editing, to improve fruit quality.
PubMed: 38902921
DOI: 10.1016/j.molp.2024.06.008 -
Journal of Evolutionary Biology Jun 2024Pollinators are thought to be the main drivers of floral evolution. Flowers are also colonized by abundant communities of microbes that can affect the interaction...
Pollinators are thought to be the main drivers of floral evolution. Flowers are also colonized by abundant communities of microbes that can affect the interaction between plants and their pollinators. Very little is known, however, about how flower-colonizing microbes influence floral evolution. Here we performed a six-generation experimental evolution study using fast-cycling Brassica rapa, in which we factorially manipulated the presence of pollinators and flower microbes to determine how pollinators and microbes interact in driving floral evolution. We measured the evolution of six morphological traits, as well as plant mating system and flower attractiveness. Only one of the six traits (flower number) evolved in response to pollinators, while microbes did not drive the evolution of any trait, nor did they interact with pollinators in driving evolution of morphological traits. Moreover, we did not find evidence that pollinators or microbes affected the evolution of flower attractiveness to pollinators. However, we found an interactive effect of pollinators and microbes on the evolution of autonomous selfing, a trait that is expected to evolve in response to pollinator limitation. Overall, we found only weak evidence that microbes mediate floral evolution. However, our ability to detect an interactive effect of pollinators and microbes might have been limited by weak pollinator-mediated selection in our experimental setting. Our results contrast with previous (similar) experimental evolution studies, highlighting the susceptibility of such experiments to drift and to experimental artefacts.
PubMed: 38902913
DOI: 10.1093/jeb/voae078