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Annual International Conference of the... Jul 2023This paper presents a high-speed rat whisker tracking and symmetry analysis system based on FPGA. The system utilizes high-speed image sensors recording rat face videos...
This paper presents a high-speed rat whisker tracking and symmetry analysis system based on FPGA. The system utilizes high-speed image sensors recording rat face videos at 120 and 1000 fps. The Xilinx Ultra96 single computer board is chosen as the platform to implement the system's processing system (PS) and the programmable logic (PL) part. The PL part is responsible for high-speed image processing and whisker tracking, while the PS part analyzes the symmetry of rat face using the tracking results from the PL part. With a processing speed FoM of 118.5 fps/GHz on the Xilinx Ultra96 single computer board and 275.47 fps/GHz on a laptop with Intel Core [email protected], the presented system achieves excellent performance. The proposed whisker detection method has a precision of 98.2% when a threshold with a 4-degree error is selected, with an average error angle of 0.98 degrees across more than 10,000 video frames. Moreover, the proposed system is capable of local video processing within millisecond delays. These results demonstrate the feasibility of developing a high-speed, accurate, and efficient whisker tracking and symmetry analysis system for rat behavior research.
Topics: Rats; Animals; Vibrissae; Image Processing, Computer-Assisted
PubMed: 38083760
DOI: 10.1109/EMBC40787.2023.10340867 -
Cell Reports Dec 2023Sensory cortical areas are organized into topographic maps representing the sensory epithelium. Interareal projections typically connect topographically matched...
Sensory cortical areas are organized into topographic maps representing the sensory epithelium. Interareal projections typically connect topographically matched subregions across areas. Because matched subregions process the same stimulus, their interaction is central to many computations. Here, we ask how topographically matched subregions of primary and secondary vibrissal somatosensory cortices (vS1 and vS2) interact during active touch. Volumetric calcium imaging in mice palpating an object with two whiskers revealed a sparse population of highly responsive, broadly tuned touch neurons especially pronounced in layer 2 of both areas. These rare neurons exhibited elevated synchrony and carried most touch-evoked activity in both directions. Lesioning the subregion of either area responding to the spared whiskers degraded touch responses in the unlesioned area, with whisker-specific vS1 lesions degrading whisker-specific vS2 touch responses. Thus, a sparse population of broadly tuned touch neurons dominates vS1-vS2 communication in both directions, and topographically matched vS1 and vS2 subregions recurrently amplify whisker touch activity.
Topics: Mice; Animals; Touch; Touch Perception; Neurons; Somatosensory Cortex; Vibrissae; Physical Stimulation
PubMed: 38064338
DOI: 10.1016/j.celrep.2023.113532 -
Meso-Py: Dual Brain Cortical Calcium Imaging in Mice during Head-Fixed Social Stimulus Presentation.ENeuro Dec 2023We present a cost-effective, compact foot-print, and open-source Raspberry Pi-based widefield imaging system. The compact nature allows the system to be used for...
We present a cost-effective, compact foot-print, and open-source Raspberry Pi-based widefield imaging system. The compact nature allows the system to be used for close-proximity dual-brain cortical mesoscale functional-imaging to simultaneously observe activity in two head-fixed animals in a staged social touch-like interaction. We provide all schematics, code, and protocols for a rail system where head-fixed mice are brought together to a distance where the macrovibrissae of each mouse make contact. Cortical neuronal functional signals (GCaMP6s; genetically encoded Ca sensor) were recorded from both mice simultaneously before, during, and after the social contact period. When the mice were together, we observed bouts of mutual whisking and cross-mouse correlated cortical activity across the cortex. Correlations were not observed in trial-shuffled mouse pairs, suggesting that correlated activity was specific to individual interactions. Whisking-related cortical signals were observed during the period where mice were together (closest contact). The effects of social stimulus presentation extend outside of regions associated with mutual touch and have global synchronizing effects on cortical activity.
Topics: Mice; Animals; Pregnancy; Female; Calcium; Brain; Head; Touch; Touch Perception; Vibrissae; Somatosensory Cortex
PubMed: 38053472
DOI: 10.1523/ENEURO.0096-23.2023 -
The Journal of Neuroscience : the... Jan 2024Body movements influence brain-wide neuronal activities. In the sensory cortex, thalamocortical bottom-up inputs and motor-sensory top-down inputs are thought to affect...
Body movements influence brain-wide neuronal activities. In the sensory cortex, thalamocortical bottom-up inputs and motor-sensory top-down inputs are thought to affect the dynamics of membrane potentials ( ) of neurons and change their processing of sensory information during movements. However, direct perturbation of the axons projecting to the sensory cortex from other remote areas during movements has remained unassessed, and therefore the interareal circuits generating motor-related signals in sensory cortices remain unclear. Using a -coupled opsin, eOPN3, we here inhibited interareal signals incoming to the whisker primary somatosensory barrel cortex (wS1) of awake male mice and tested their effects on whisking-related changes in neuronal activities in wS1. Spontaneous whisking in air induced the changes in spike rates of a subset of wS1 neurons, which were accompanied by depolarization and substantial reduction of slow-wave oscillatory fluctuations of Despite an extensive innervation, inhibition of inputs from the whisker primary motor cortex (wM1) to wS1 did not alter the spike rates and dynamics of wS1 neurons during whisking. In contrast, inhibition of axons from the whisker-related thalamus (wTLM) and the whisker secondary somatosensory cortex (wS2) to wS1 largely attenuated the whisking-related supra- and sub-threshold dynamics of wS1 neurons. Notably, silencing inputs from wTLM markedly decreased the modulation depth of whisking phase-tuned neurons in wS1, while inhibiting wS2 inputs did not impact the whisking variable tuning of wS1 neurons. Thus, sensorimotor integration in wS1 during spontaneous whisking is predominantly facilitated by direct synaptic inputs from wTLM and wS2 rather than from wM1.
Topics: Mice; Male; Animals; Neurons; Somatosensory Cortex; Axons; Membrane Potentials; Movement; Vibrissae
PubMed: 38050130
DOI: 10.1523/JNEUROSCI.1148-23.2023 -
The Journal of Experimental Biology Nov 2023For the two dolphin species Sotalia guianensis (Guiana dolphin) and Tursiops truncatus (bottlenose dolphin), previous research has shown that the vibrissal crypts...
For the two dolphin species Sotalia guianensis (Guiana dolphin) and Tursiops truncatus (bottlenose dolphin), previous research has shown that the vibrissal crypts located on the rostrum represent highly innervated, ampullary electroreceptors and that both species are correspondingly sensitive to weak electric fields. In the present study, for a comparative assessment of the sensitivity of the bottlenose dolphin's electroreceptive system, we determined detection thresholds for DC and AC electric fields with two bottlenose dolphins. In a psychophysical experiment, the animals were trained to respond to electric field stimuli using the go/no-go paradigm. We show that the two bottlenose dolphins are able to detect DC electric fields as low as 2.4 and 5.5 µV cm-1, respectively, a detection threshold in the same order of magnitude as those in the platypus and the Guiana dolphin. Detection thresholds for AC fields (1, 5 and 25 Hz) were generally higher than those for DC fields, and the sensitivity for AC fields decreased with increasing frequency. Although the electroreceptive sensitivity of dolphins is lower than that of elasmobranchs, it is suggested that it allows for both micro- and macro-scale orientation. In dolphins pursuing benthic foraging strategies, electroreception may facilitate short-range prey detection and target-oriented snapping of their prey. Furthermore, the ability to detect weak electric fields may enable dolphins to perceive the Earth's magnetic field through induction-based magnetoreception, thus allowing large-scale orientation.
Topics: Animals; Bottle-Nosed Dolphin; Sensation; Vibrissae
PubMed: 38035544
DOI: 10.1242/jeb.245845 -
Life (Basel, Switzerland) Nov 2023Increasing concerns about hair loss affect people's quality of life. Recent studies have found that sympathetic nerves play a positive role in regulating hair follicle...
Increasing concerns about hair loss affect people's quality of life. Recent studies have found that sympathetic nerves play a positive role in regulating hair follicle stem cell activity to promote hair growth. However, no study has investigated sympathetic innervation of transplanted follicles. Rat vibrissa follicles were extracted and implanted under the dorsal skin of BALB/c-nu/nu mice using one of two types of follicles: (1) intact follicles, where transplants included bulbs, and (2) upper follicles, where transplants excluded bulbs. Follicular samples were collected for hematoxylin and eosin staining, immunofluorescence staining for tyrosine hydroxylase (TH, a sympathetic marker) and enzyme-linked immunosorbent assays. At 37 days after implantation in both groups, follicles had entered anagen, with the growth of long hair shafts; tyrosine-hydroxylase-positive nerves were innervating follicles (1.45-fold); and norepinephrine concentrations (2.03-fold) were significantly increased compared to 5 days, but did not return to normal. We demonstrate the survival of intact and upper follicle xenografts and the partial restoration of sympathetic reinnervations of both transplanted follicles.
PubMed: 38004304
DOI: 10.3390/life13112163 -
Current Biology : CB Nov 2023New work reveals whisker landmark coding in the retrosplenial cortex of mice, broadening our understanding of multisensory spatial cognition, contextual processing, and...
New work reveals whisker landmark coding in the retrosplenial cortex of mice, broadening our understanding of multisensory spatial cognition, contextual processing, and spatial predictive coding.
Topics: Animals; Mice; Cognition; Gyrus Cinguli; Spatial Navigation; Touch; Touch Perception; Vibrissae
PubMed: 37989098
DOI: 10.1016/j.cub.2023.10.018 -
The Journal of Physiology Jan 2024The whisker system is widely used as a model system for understanding sensorimotor integration. Purkinje cells in the crus regions of the cerebellum have been reported...
The whisker system is widely used as a model system for understanding sensorimotor integration. Purkinje cells in the crus regions of the cerebellum have been reported to linearly encode whisker midpoint, but it is unknown whether the paramedian and simplex lobules as well as their target neurons in the cerebellar nuclei also encode whisker kinematics and if so which ones. Elucidating how these kinematics are represented throughout the cerebellar hemisphere is essential for understanding how the cerebellum coordinates multiple sensorimotor modalities. Exploring the cerebellar hemisphere of mice using optogenetic stimulation, we found that whisker movements can be elicited by stimulation of Purkinje cells in not only crus1 and crus2, but also in the paramedian lobule and lobule simplex; activation of cells in the medial paramedian lobule had on average the shortest latency, whereas that of cells in lobule simplex elicited similar kinematics as those in crus1 and crus2. During spontaneous whisking behaviour, simple spike activity correlated in general better with velocity than position of the whiskers, but it varied between protraction and retraction as well as per lobule. The cerebellar nuclei neurons targeted by the Purkinje cells showed similar activity patterns characterized by a wide variety of kinematic signals, yet with a dominance for velocity. Taken together, our data indicate that whisker movements are much more prominently and diversely represented in the cerebellar cortex and nuclei than assumed, highlighting the rich repertoire of cerebellar control in the kinematics of movements that can be engaged during coordination. KEY POINTS: Excitation of Purkinje cells throughout the cerebellar hemispheres induces whisker movement, with the shortest latency and longest duration within the paramedian lobe. Purkinje cells have differential encoding for the fast and slow components of whisking. Purkinje cells encode not only the position but also the velocity of whiskers. Purkinje cells with high sensitivity for whisker velocity are preferentially located in the medial part of lobule simplex, crus1 and lateral paramedian. In the downstream cerebellar nuclei, neurons with high sensitivity for whisker velocity are located at the intersection between the medial and interposed nucleus.
Topics: Mice; Animals; Vibrissae; Biomechanical Phenomena; Cerebellum; Purkinje Cells; Cerebellar Cortex
PubMed: 37987552
DOI: 10.1113/JP284064 -
Advances in Marine Biology 2023In the pygmy sperm whale (Kogia breviceps, Blainville 1838), vibrissae are present in neonates, but within a few months the hairs are lost, and the structures remain as...
In the pygmy sperm whale (Kogia breviceps, Blainville 1838), vibrissae are present in neonates, but within a few months the hairs are lost, and the structures remain as empty vibrissal crypts (VCs). In this work, we have studied histologically the facial vibrissal follicles of two juveniles and one adult specimens stranded dead. A few VCs with no visible hairs were found grouped in a row rostral to each eye. The follicular lumen, covered by a simple squamous epithelium, showed invaginations in the most superficial part. Beneath the epithelium, the follicle walls were made of loose connective tissue and were encircled by a thick capsule of dense connective tissue. In juveniles, a dermal papilla was found basally and, from it, a non-keratinized pseudo hair grew upwards but did not reach the skin surface. The VCs were richly innervated and irrigated. Many lamellated corpuscles were identified in the subluminal connective tissue of the crypt walls. A large venous cavernous plexus was located beneath and around the hair papilla. The main differences observed in the adult specimen were the degeneration and calcification of both the dermal papilla and the pseudo hair, and the absence of the venous cavernous plexus, albeit maintaining a rich vascularization and innervation. Our study revealed that VCs of the pygmy sperm whale possess features of fully functional sensory structures, with a microanatomy different from those described in other species. In addition, they undergo a postnatal morphological transformation, which implies functional differences between the VCs of neonates and adults.
Topics: Animals; Whales; Hair Follicle; Hair; Face; Scalp
PubMed: 37980129
DOI: 10.1016/bs.amb.2023.08.003 -
Bioinspiration & Biomimetics Nov 2023Pinniped vibrissae possess a unique and complex three-dimensional topography, which has beneficial fluid flow characteristics such as substantial reductions in drag,...
Pinniped vibrissae possess a unique and complex three-dimensional topography, which has beneficial fluid flow characteristics such as substantial reductions in drag, lift, and vortex induced vibration. To understand and leverage these effects, the downstream vortex dynamics must be studied. Dye visualization is a traditional qualitative method of capturing these downstream effects, specifically in comparative biological investigations where complex equipment can be prohibitive. High-fidelity numerical simulations or experimental particle image velocimetry are commonplace for quantitative high-resolution flow measurements, but are computationally expensive, require costly equipment, and can have limited measurement windows. This study establishes a method for extracting quantitative data from standard dye visualization experiments on seal whisker geometries by leveraging novel but intuitive computer vision techniques, which maintain simplicity and an advantageous large experimental viewing window while automating the extraction of vortex frequency, position, and advection. Results are compared to direct numerical simulation (DNS) data for comparable geometries. Power spectra and Strouhal numbers show consistent behavior between methods for a Reynolds number of 500, with minima at the canonical geometry wavelength of 3.43 and a peak frequency of 0.2 for a Reynolds number of 250. The vortex tracking reveals a clear increase in velocity from roll-up to 3.5 whisker diameters downstream, with a strong overlap with the DNS data but shows steady results beyond the limited DNS window. This investigation provides insight into a valuable bio-inspired engineering model while advancing an analytical methodology that can readily be applied to a broad range of comparative biological studies.
Topics: Animals; Vibrissae; Caniformia; Seals, Earless; Vibration; Computer Simulation
PubMed: 37939394
DOI: 10.1088/1748-3190/ad0aa8