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Frontiers in Microbiology 2023The Antarctic McMurdo Dry Valleys are geologically diverse, encompassing a wide variety of soil habitats. These environments are largely dominated by microorganisms,...
INTRODUCTION
The Antarctic McMurdo Dry Valleys are geologically diverse, encompassing a wide variety of soil habitats. These environments are largely dominated by microorganisms, which drive the ecosystem services of the region. While altitude is a well-established driver of eukaryotic biodiversity in these Antarctic ice-free areas (and many non-Antarctic environments), little is known of the relationship between altitude and microbial community structure and functionality in continental Antarctica.
METHODS
We analysed prokaryotic and lower eukaryotic diversity from soil samples across a 684 m altitudinal transect in the lower Taylor Valley, Antarctica and performed a phylogenic characterization of soil microbial communities using short-read sequencing of the 16S rRNA and ITS marker gene amplicons.
RESULTS AND DISCUSSION
Phylogenetic analysis showed clear altitudinal trends in soil microbial composition and structure. Cyanobacteria were more prevalent in higher altitude samples, while the highly stress resistant Chloroflexota and Deinococcota were more prevalent in lower altitude samples. We also detected a shift from Basidiomycota to Chytridiomycota with increasing altitude. Several genera associated with trace gas chemotrophy, including and , were widely distributed across the entire transect, suggesting that trace-gas chemotrophy may be an important trophic strategy for microbial survival in oligotrophic environments. The ratio of trace-gas chemotrophs to photoautotrophs was significantly higher in lower altitude samples. Co-occurrence network analysis of prokaryotic communities showed some significant differences in connectivity within the communities from different altitudinal zones, with cyanobacterial and trace-gas chemotrophy-associated taxa being identified as potential keystone taxa for soil communities at higher altitudes. By contrast, the prokaryotic network at low altitudes was dominated by heterotrophic keystone taxa, thus suggesting a clear trophic distinction between soil prokaryotic communities at different altitudes. Based on these results, we conclude that altitude is an important driver of microbial ecology in Antarctic ice-free soil habitats.
PubMed: 37555066
DOI: 10.3389/fmicb.2023.1203216 -
Foods (Basel, Switzerland) Jun 2023The ice plant is a species that is grown mainly in the dry regions of the American West and contains various minerals and ingredients beneficial for human health, such...
The ice plant is a species that is grown mainly in the dry regions of the American West and contains various minerals and ingredients beneficial for human health, such as inositol and beta-carotene. With the growing trend towards healthy foods, pasta consumption has also increased. Pasta is a convenient and low-glycemic-index food that is composed mainly of carbohydrates, proteins, lipids, dietary fiber, and trace amounts of minerals. The optimal mixing ratio was evaluated to produce pasta of the highest quality in terms of blood sugar elevation and antioxidant efficacy. The components and minerals of the ice plant, including D-pinitol and inositol, were analyzed, and 20 essential amino acids were identified. In this study, we also investigated the quality and characteristics of ice plant paste and eggs, as well as the quality, antioxidant activity, and formulation of raw materials mixed with ice plant at different ratios. Optimal conditions were found to be 46.73 g of ice plant paste in 100 g of durum wheat flour, 20.23 g of egg, and 2 g of salt, providing a way to develop fresh pasta that enhances the health benefits of ice plant paste without excessive moisture and other ingredients.
PubMed: 37444220
DOI: 10.3390/foods12132482 -
Data in Brief Jun 2023Zebrafish () have the capacity for successful adult optic nerve regeneration. In contrast, mammals lack this intrinsic ability and undergo irreversible neurodegeneration...
Zebrafish () have the capacity for successful adult optic nerve regeneration. In contrast, mammals lack this intrinsic ability and undergo irreversible neurodegeneration seen in glaucoma and other optic neuropathies. Optic nerve regeneration is often studied using optic nerve crush, a mechanical neurodegenerative model. Untargeted metabolomic studies within successful regenerative models are deficient. Evaluation of tissue metabolomic changes in active zebrafish optic nerve regeneration can elucidate prioritized metabolite pathways that can be targeted in mammalian systems for therapeutic development. Female and male (6 month to 1 year old wild type) right zebrafish optic nerves were crushed and collected three days after. Contralateral, uninjured optic nerves were collected as controls. The tissue was dissected from euthanized fish and frozen on dry ice. Samples were pooled for each category (female crush, female control, male crush, male control) and pooled at = 31 to obtain sufficient metabolite concentrations for analysis. Optic nerve regeneration at 3 days post crush was demonstrated by microscope visualization of GFP fluorescence in transgenic fish. Metabolites were extracted using a Precellys Homogenizer and a serial extraction method: (1) 1:1 Methanol/Water and (2) 8:1:1 Acetonitrile/Methanol/Acetone. Metabolites were analyzed by untargeted liquid chromatography-mass spectrometry (LC MS-MS) profiling using a Q-Exactive Orbitrap instrument coupled with Vanquish Horizon Binary UHPLC LC-MS system. Metabolites were identified and quantified using Compound Discoverer 3.3 and isotopic internal metabolites standards.
PubMed: 37383800
DOI: 10.1016/j.dib.2023.109102 -
Materials (Basel, Switzerland) Jun 2023The management of waste materials, particularly non-biodegradable substances such as plastics and composites, is an increasingly pressing issue. Energy efficiency in...
The management of waste materials, particularly non-biodegradable substances such as plastics and composites, is an increasingly pressing issue. Energy efficiency in industrial processes is crucial throughout their life cycle, including the handling of materials such as carbon dioxide (CO), which has a significant environmental impact. This study focuses on the conversion of solid CO into pellets using ram extrusion, a widely used technique. The length of the die land (DL) in this process plays a critical role in determining the maximum extrusion force and the density of dry ice pellets. However, the influence of DL length on the characteristics of dry ice snow, known as compressed carbon dioxide (CCD), remains understudied. To address this research gap, the authors conducted experimental trials using a customized ram extrusion setup, varying the DL length while keeping the other parameters constant. The results demonstrate a substantial correlation between DL length and both the maximum extrusion force and dry ice pellets density. Increasing the DL length leads to a decreased extrusion force and optimized pellet density. These findings provide valuable insights for optimizing the ram extrusion process of dry ice pellets and improving waste management, energy efficiency, and product quality in industries utilizing this technique.
PubMed: 37374466
DOI: 10.3390/ma16124281 -
Journal of the American Mosquito... Jun 2023We compared the effectiveness of 4 different carbon dioxide (CO2) sources (sugar-fermented BG-CO2, sugar-fermented Fleischmann yeast, dry ice, and compressed gas...
We compared the effectiveness of 4 different carbon dioxide (CO2) sources (sugar-fermented BG-CO2, sugar-fermented Fleischmann yeast, dry ice, and compressed gas cylinders) in attracting different mosquito species in 2 separate 4 × 4 Latin square trials. The CO2 generated by dry ice and the gas cylinders collected more Culex quinquefasciatus than the sugar-fermented BG-CO2 and Fleischmann yeasts during the 1st trial (16-h surveillance periods), but there was no significant difference in Aedes aegypti numbers. There were no significant differences between the different CO2 sources in collecting Cx. quinquefasciatus and Ae. aegypti mosquitoes in the 2nd trial (24-h surveillance periods). Catches for Culiseta inornata and Cx. tarsalis were too low in both experiments for formal statistical analysis. Data can be used to inform local mosquito surveillance programs, but the selection of a CO2 source will also depend on financial and logistical constraints.
Topics: Humans; Animals; Carbon Dioxide; Mosquito Vectors; Dry Ice; Arizona; Universities; Aedes; Culex; Sugars; Mosquito Control
PubMed: 37270849
DOI: 10.2987/22-7094 -
Antioxidants (Basel, Switzerland) Apr 2023Thermal reactions can significantly alter the metabolomic and lipidomic content of biofluids and tissues during storage. In this study, we investigated the stability of...
Thermal reactions can significantly alter the metabolomic and lipidomic content of biofluids and tissues during storage. In this study, we investigated the stability of polar metabolites and complex lipids in dry human serum and mouse liver extracts over a three-day period under various temperature conditions. Specifically, we tested temperatures of -80 °C (freezer), -24 °C (freezer), -0.5 °C (polystyrene box with gel-based ice packs), +5 °C (refrigerator), +23 °C (laboratory, room temperature), and +30 °C (thermostat) to simulate the time between sample extraction and analysis, shipping dry extracts to different labs as an alternative to dry ice, and document the impact of higher temperatures on sample integrity. The extracts were analyzed using five fast liquid chromatography-mass spectrometry (LC-MS) methods to screen polar metabolites and complex lipids, and over 600 metabolites were annotated in serum and liver extracts. We found that storing dry extracts at -24 °C and partially at -0.5 °C provided comparable results to -80 °C (reference condition). However, increasing the storage temperatures led to significant changes in oxidized triacylglycerols, phospholipids, and fatty acids within three days. Polar metabolites were mainly affected at storage temperatures of +23 °C and +30 °C.
PubMed: 37237852
DOI: 10.3390/antiox12050986 -
Journal of Chemical Health & Safety May 2023Dry ice is widely used in the chemistry research settings as an excellent coolant. Herein, we report a case study of a graduate student researcher who lost consciousness...
Dry ice is widely used in the chemistry research settings as an excellent coolant. Herein, we report a case study of a graduate student researcher who lost consciousness while retrieving 180 lbs of dry ice from a deep dry ice container. We share the details of the incident and the lessons learned from it to promote safer handling of dry ice in these situations.
PubMed: 37235060
DOI: 10.1021/acs.chas.3c00027 -
Advanced Science (Weinheim,... Aug 2023Bioelectric electrodes with low modulus and high adhesion have been intensively pursued, as they afford conformal and strong bonding at skin-electrode interface to...
Bioelectric electrodes with low modulus and high adhesion have been intensively pursued, as they afford conformal and strong bonding at skin-electrode interface to improve the fidelity and stability of electrophysiological signals. However, during detachment, tough adhesion can cause pain or skin allergy; worse still, the soft electrodes can suffer damage due to excessive stretch/torsion, hampering long-term, dynamic, and multiple uses. Herein, a bioelectric electrode is proposed by transferring silver nanowires (AgNWs) network to the surface of bistable adhesive polymer (BAP). The phase transition temperature of BAP is tuned to be slightly below skin temperature at 30 °C. Triggered by skin heat, the BAP electrode achieves low modulus and high adhesion within seconds, allowing robust skin-electrode interface under dry, wet, and body-moving conditions. Ice bag treatment can dramatically stiffen the electrode and reduce the adhesion, which allows painless detachment and avoids electrode damage. Meanwhile, the AgNWs network with biaxial wrinkled microstructure remarkably promotes the electro-mechanical stability of the BAP electrode. The BAP electrode successfully combines long-term (7 days) and dynamic (body movements, sweat, underwater) stability, reusability (at least ten times), and minimized skin irritation during electrophysiological monitoring. The high signal-to-noise ratio and dynamic stability are demonstrated in the application of piano-playing training.
PubMed: 37199692
DOI: 10.1002/advs.202300793 -
PloS One 2023Limited information exists on mercury concentrations and environmental drivers of mercury bioaccumulation in high latitude terrestrial carnivores. Spatial patterns of...
Limited information exists on mercury concentrations and environmental drivers of mercury bioaccumulation in high latitude terrestrial carnivores. Spatial patterns of mercury concentrations in wolverine (Gulo gulo, n = 419) were assessed across a 1,600,000 km2 study area in relation to landscape, climate, diet and biological factors in Arctic and boreal biomes of western Canada. Hydrogen stable isotope ratios were measured in wolverine hair from a subset of 80 animals to assess the spatial scale for characterizing environmental conditions of their habitat. Habitat characteristics were determined using GIS methods and raster datasets at two scales, the collection location point and a 150 km radius buffer, which was selected based on results of a correlation analysis between hydrogen stable isotopes in precipitation and wolverine hair. Total mercury concentrations in wolverine muscle ranged >2 orders of magnitude from 0.01 to 5.72 μg/g dry weight and varied geographically, with the highest concentrations in the Northwest Territories followed by Nunavut and Yukon. Regression models at both spatial scales indicated diet (based on nitrogen stable isotope ratios) was the strongest explanatory variable of mercury concentrations in wolverine, with smaller though statistically significant contributions from landscape variables (soil organic carbon, percent cover of wet area, percent cover of perennial snow-ice) and distance to the Arctic Ocean coast. The carbon and nitrogen stable isotope ratios of wolverine muscle suggested greater mercury bioaccumulation could be associated with feeding on marine biota in coastal habitats. Landscape variables identified in the modelling may reflect habitat conditions which support enhanced methylmercury transfer to terrestrial biota. Spatially-explicit estimates of wet atmospheric deposition were positively correlated with wolverine mercury concentrations but this variable was not selected in the final regression models. These landscape patterns provide a basis for further research on underlying processes enhancing methylmercury uptake in high latitude terrestrial food webs.
Topics: Animals; Mercury; Methylmercury Compounds; Environmental Monitoring; Carbon; Soil; Diet; Food Chain; Nitrogen Isotopes; Nitrogen; Arctic Regions; Water Pollutants, Chemical; Mustelidae
PubMed: 37186585
DOI: 10.1371/journal.pone.0285826 -
Microbiology Spectrum Jun 2023The lacustrine systems of La Brava and La Punta, located in the Tilopozo sector in the extreme south of Salar de Atacama, are pristine high-altitude Andean lakes found...
The lacustrine systems of La Brava and La Punta, located in the Tilopozo sector in the extreme south of Salar de Atacama, are pristine high-altitude Andean lakes found along the central Andes of South America. This shallow ecosystem suffers from permanent evaporation, leading to falling water levels, causing it to recede or disappear during the dry season. This dynamic causes physicochemical changes in lakes, such as low nutrient availability, pH change, and dissolved metals, which can influence the composition of the microbial community. In this study, we used a metataxonomic approach (16S rRNA hypervariable regions V3 to V4) to characterize the sedimentary microbiota of these lakes. To understand how the water column affects and is structured in the microbiota of these lakes, we combined the analysis of the persistence of the water column through satellite images and physicochemical characterization. Our results show a significant difference in abiotic factors and microbiota composition between La Punta and La Brava lakes. In addition, microbiota analysis revealed compositional changes in the ecological disaggregation (main and isolated bodies) and antagonistic changes in the abundance of certain taxa between lakes. These findings are an invaluable resource for understanding the microbiological diversity of high Andean lakes using a multidisciplinary approach that evaluates the microbiota behavior in response to abiotic factors. In this study, we analyzed the persistence of the water column through satellite images and physicochemical characterization to investigate the composition and diversity in High Andean Lake Systems in a hyperarid environment. In addition to the persistence of the water column, this approach can be used to analyze changes in the morphology of saline accumulations and persistence of snow or ice; for example, for establishing variable plant cover over time and evaluating the microbiota associated with soils with seasonal changes in plants. This makes it an ideal approach to search for novel extremophilic microorganisms with unique properties. In our case, it was used to study microorganisms capable of resisting desiccation and water restriction for a considerable period and adapting to survive in ecological niches, such as those with high UV irradiation, extreme drought, and high salt concentration.
Topics: Lakes; Seasons; Water; RNA, Ribosomal, 16S; Altitude; Microbiota
PubMed: 37102964
DOI: 10.1128/spectrum.05200-22