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Journal of the Science of Food and... Mar 2024Pile fermentation is one of the key steps in developing the Liupao tea (LBT) quality and unique characteristics. The complex biochemical profile of LBT results from...
BACKGROUND
Pile fermentation is one of the key steps in developing the Liupao tea (LBT) quality and unique characteristics. The complex biochemical profile of LBT results from microorganisms present during the pile-fermentation process. However, the critical underlying microorganisms and the marker compounds still need to be determined.
RESULTS
Staphylococcus, Brevibacterium, Kocuria, Aspergillus, and Blastobotrys were the common dominant microorganisms at the end of the pile fermentation of LBT. Staphylococcus, Aspergillus, Blastobotrys, and nine other genera carried by raw tea are the core microorganisms in the LBT during pile fermentation. A total of 29 critical compounds contributed to the metabolic changes caused by the processing of LBT. Of these, gallic acid, adenine, hypoxanthine, uridine, betaine, 3,4-dihydroxybenzaldehyde, and α-linolenic acid could be characterized as potential marker compounds. Correlation analysis showed that the core microorganisms, including Sphingomonas, Staphylococcus, Kocuria, Aureobasidium, Blastobotrys, Debaryomyce, and Trichomonascus, were closely related to major chemical components and differential compounds. Moreover, the mutually promoting Staphylococcus, Kocuria, Blastobotrys, and Trichomonascus were correlated with the enrichment of marker compounds. Integrated molecular networking and metabolic pathways revealed relevant compounds and enzymes that possibly affect the enrichment of marker compounds.
CONCLUSION
This study analyzed the LBT fermentation samples by omics analysis to reveal the stable microbial community structure, critical microorganisms, and markers compounds affecting the quality of LBT, which contributes to a better understanding of pile fermentation of LBT and the fermentation theory of dark tea. © 2023 Society of Chemical Industry.
Topics: Fermentation; Tea; Aspergillus; Microbiota; Saccharomycetales
PubMed: 38017631
DOI: 10.1002/jsfa.13177 -
International Journal of Molecular... Nov 2023(), a commonly found yeast-like fungus, exhibits adaptability to a wide range of pH environments. However, the specific mechanisms and regulatory pathways through which...
(), a commonly found yeast-like fungus, exhibits adaptability to a wide range of pH environments. However, the specific mechanisms and regulatory pathways through which respond to external pH remain to be fully understood. In this study, we first sequenced the whole genome of using Nanopore technology and generated a circle map. Subsequently, we explored the biomass, pullulan production, melanin production, and polymalic acid production of when cultivated at different pH levels. We selected pH 4.0, pH 7.0, and pH 10.0 to represent acidic, neutral, and alkaline environments, respectively, and examined the morphological characteristics of using SEM and TEM. Our observations revealed that predominantly exhibited hyphal growth with thicker cell walls under acidic conditions. In neutral environments, it primarily displayed thick-walled spores and yeast-like cells, while in alkaline conditions, it mainly assumed an elongated yeast-like cell morphology. Additionally, transcriptome analysis unveiled that orchestrates its response to shifts in environmental pH by modulating its cellular morphology and the expression of genes involved in pullulan, melanin, and polymalic acid synthesis. This research enhances the understanding of how regulates itself in diverse pH settings and offers valuable guidance for developing and applying engineered strains.
Topics: Ascomycota; Saccharomyces cerevisiae; Melanins; Gene Expression Profiling; Hydrogen-Ion Concentration; Fermentation
PubMed: 38003294
DOI: 10.3390/ijms242216103 -
BioRxiv : the Preprint Server For... Nov 2023One of the major barriers of fungal infections of mammals is the inability to grow and/or survive at mammalian body temperature, typically around 37°C. This has...
One of the major barriers of fungal infections of mammals is the inability to grow and/or survive at mammalian body temperature, typically around 37°C. This has provided mammals an advantage over fungi. However, environmental fungi may soon adapt to persist at higher temperatures, consistent with mammalian body temperature, due to thermal selection pressures imposed by climate change, global warming, and increased frequency of extreme heat events. Consequently, there is a need for more updated information about the thermal tolerance range of fungi near humans, such as in urban areas. The heat island effect suggests that cities are up to 8°C warmer than their suburban counterparts because of increased heat production, asphalt coatings and reduced greenspace among other factors, and it is more common in lower income and marginalized urban communities. Thus, urban centers are at increased risk for the emergence of heat tolerant fungi. In this study, we developed a methodology to collect and archive fungal isolates from sidewalk and soil samples in both warmer and cooler neighborhoods in Baltimore, Maryland. We demonstrate a novel methodology for fungal sample collection from sidewalks, employing the use of standardized and commercially available taffy. Analysis of fungal isolates collected from warmer neighborhoods revealed greater thermal tolerance and lower pigmentation, suggesting local adaptation to heat. Lower pigmentation in hotter areas is consistent with the notion that fungi use pigmentation to help regulate their temperature. Further, we identified the robust presence of the polyextremotolerant fungus from the warmest neighborhood in Baltimore further showing that the extreme conditions of cities can drive proliferation of extremotolerant fungi. This study develops new techniques for environmental fungal collection and provides insight on the fungal census in an urban setting that can inform future work to study how urban environments may drive stress/thermotolerance in fungi, which could alter fungal interactions with humans and impact human health.
PubMed: 37986923
DOI: 10.1101/2023.11.10.566554 -
Preparative Biochemistry & Biotechnology Nov 2023LB83 is a versatile biocatalyst that produces a plethora of bioactive products thriving on a variety of feedstocks under the varying culture conditions. In our last...
LB83 is a versatile biocatalyst that produces a plethora of bioactive products thriving on a variety of feedstocks under the varying culture conditions. In our last study using this microorganism, we found cellulase activity (FPase, 2.27 U/ml; CMCase, 7.42 U/ml) and other plant cell wall degrading enzyme activities grown on sugarcane bagasse and soybean meal as carbon source and nitrogen, respectively. In the present study, we provide insights on the secretome analysis of this enzymatic cocktail. The secretome analysis of LB83 by Liquid Chromatography coupled to Mass Spectroscopy (LC-MS/MS) revealed 38 classes of Carbohydrate Active enZymes (CAZymes) of a total of 464 identified proteins. These CAZymes consisted of 21 glycoside hydrolases (55.26%), 12 glycoside hydrolases harboring carbohydrate-binding module (31.58%), 4 carbohydrate esterases (10.53%) and one glycosyl transferase (2.63%). To the best of our knowledge, this is the first report on the secretome analysis of LB83.
PubMed: 37966162
DOI: 10.1080/10826068.2023.2279109 -
Plants (Basel, Switzerland) Oct 2023The Korean fir tree , an endangered species in Korea, faces threats primarily from climate change-induced stress and drought. This study proposed a sustainable method to...
The Korean fir tree , an endangered species in Korea, faces threats primarily from climate change-induced stress and drought. This study proposed a sustainable method to enhance drought tolerance using a black yeast-like fungus identified as (AK10). The 16S/ITS metabarcoding analysis assessed the impact of drought and AK10 treatment on the seedlings' rhizosphere microbiome. Results revealed a profound drought influence on the microbiome, particularly affecting fungal mycobiota. Drought-stressed seedlings exhibited elevated Agaricaceae levels, opportunistic fungi generally associated with decomposition. AK10 treatment significantly mitigated this proliferation and increased the relative abundance of beneficial fungi like and , known biocontrol agents and phosphate solubilizers. A notable reduction in the phytopathogenic levels was observed with AK10, alongside an increase in beneficial bacteria, including and . Furthermore, the conducted correlation analysis shed light on microbial interrelationships within the rhizosphere, elucidating potential co-associations and antagonisms. Taken together, the isolated AK10 identified in this study serves as a potential biostimulant, enhancing the drought tolerance in through beneficial alterations in the rhizosphere microbiome. This approach presents a promising strategy for the conservation of this endangered species.
PubMed: 37896116
DOI: 10.3390/plants12203653 -
Foods (Basel, Switzerland) Oct 2023and are important pathogenic fungi that pose a serious threat because of their ability to produce mycotoxins, including ochratoxin A (OTA) and aflatoxins (AFs). The...
and are important pathogenic fungi that pose a serious threat because of their ability to produce mycotoxins, including ochratoxin A (OTA) and aflatoxins (AFs). The main method of reducing these pathogens is the use of chemical fungicides, though recently there has been a focus on finding biological control agents. The obtained results from this study indicate the great potential of two wild yeast strains, PP3 and D10, in the biological control of and and reductions in the amount of OTA and AFs they produce. In vitro, the growth of the mycelium of pathogens was reduced by 41.21% to 53.64%, and spore germination was inhibited by 58.39% to 71.22%. Both yeast strains produced the enzymes chitinase, β-1,3-glucanase, and amylase, and PP3 additionally produced protease and cellulase. This yeast strain also had the ability to grow over a wide range of temperature (4-30 °C), salinity (0-12%) and pH (4-11) conditions. No growth of the yeast was observed at 37 °C, nor any biogenic amines or hydrogen sulfide production. Adding the tested yeast inoculum to the dough reduced OTA (within 14.55-21.80%) and AFs (within 18.10-25.02%) in the model bread.
PubMed: 37893764
DOI: 10.3390/foods12203871 -
Journal of Fungi (Basel, Switzerland) Oct 2023Intertidal zones comprise diverse habitats and directly suffer from the influences of human activities. Nevertheless, the seasonal fluctuations in fungal diversity and...
Intertidal zones comprise diverse habitats and directly suffer from the influences of human activities. Nevertheless, the seasonal fluctuations in fungal diversity and community structure in these areas are not well comprehended. To address this gap, samples of seawater and sediment were collected seasonally from the estuary and swimming beaches of Qingdao's intertidal areas in China and were analyzed using a metabarcoding approach targeting ITS2 rDNA regions. Compared to the seawater community dominated by and Agaricomycetes, the sediment community was rather dominated by Dothideomycetes and Eurotiomycetes. Furthermore, the seawater community shifted with the seasons but not with the locations, while the sediment community shifted seasonally and spatially, with a specific trend showing that , , and occurred predominantly in the estuarine habitats during winter and in the beach habitats during spring. These spatiotemporal shifts in fungal communities' composition were supported by the PERMANOVA test and could be explained partially by the environmental variables checked, including temperature, salinity, and total organic carbon. Unexpectedly, the lowest fungal richness was observed in the summer sediments from two swimming beaches which were attracting a high influx of tourists during summer, leading to a significant anthropogenic influence. Predicted trophic modes of fungal taxa exhibited a seasonal pattern with an abundance of saprotrophic fungi in the summer sediments, positively correlating to the temperature, while the taxa affiliated with symbiotroph and pathotroph-saprotroph occurred abundantly in the winter and spring sediments, respectively. Our results demonstrate the space-time shifts in terms of the fungal community, as well as the trophic modes in the intertidal region, providing in-depth insights into the potential influence of environmental factors and human activity on intertidal mycobiomes.
PubMed: 37888271
DOI: 10.3390/jof9101015 -
Carbohydrate Polymers Dec 2023Aureobasidium pullulans β-(1 → 3, 1 → 6)-glucan (APG) has a high degree of β-(1 → 6)-glucosyl branching and a regular triple helical structure similar to...
Aureobasidium pullulans β-(1 → 3, 1 → 6)-glucan (APG) has a high degree of β-(1 → 6)-glucosyl branching and a regular triple helical structure similar to that of schizophyllan. In this study, APG was carboxymethylated to different degrees of substitution (DS = 0.51, 1.0, and 2.0, denoted CMAPG 1-3, respectively) using a heterogeneous reaction. With increasing DS, the triple-helix structure drastically decreased and converted to a random coil structure in CMAPG 3. Further, aqueous solutions of CMAPG changed from pseudoplastic fluids to perfect Newtonian liquids with increasing DS, indicating that the intra- and intermolecular hydrogen bonds had been cleaved by the substituents to form a random coil structure. In addition, APG and CMAPG solutions exhibited scavenging ability against hydroxyl, organic, and sulfate radicals. It was also found that the carboxymethylation of APG drastically enhanced the organic radical scavenging ability. On the basis of the relationship between the DS and radical scavenging ability of the CMAPG samples, we believe hydroxyl and organic radicals were preferably scavenged by the donation of hydrogen atoms from the glucose rings and the methylene moieties of the carboxymethyl groups, respectively. Considering the obtained results, CMAPG and APG are expected to have applications in pharmaceuticals, functional foods, and cosmetics as antioxidant polysaccharides.
Topics: Glucans; Antioxidants; Polysaccharides; Sizofiran; beta-Glucans
PubMed: 37839833
DOI: 10.1016/j.carbpol.2023.121357 -
Plants (Basel, Switzerland) Sep 2023The growth of four commercial biocontrol agents (BCAs: (BAD), (APD), (MFN), and (TAS)) was evaluated using turbidimetric assays on artificial substrates mimicking...
The growth of four commercial biocontrol agents (BCAs: (BAD), (APD), (MFN), and (TAS)) was evaluated using turbidimetric assays on artificial substrates mimicking the chemical berry composition at four stages: pea-sized berries, veraison, softening, and ripe berries. The response of BCA growth differed among BCAs. Subsequently, the BCAs' population size was assessed after 1 to 13 days of incubation on the substrate mimicking ripe berries at 15 to 35 °C. The population size of BAD increased with temperatures, while that of MFN decreased; the population sizes of APD and TAS showed bell-shaped patterns with lower growth at 15 or 35 °C. Finally, the BCAs were applied to ripe berries and then incubated at 15 to 30 °C. After 1 to 13 days, the berries were inoculated with and incubated for 7 days, after which the BCA control efficacy was assessed. The highest control was observed at 25 °C for BAD and APD, at 15 to 20 °C for MFN, and at 25 to 30 °C for TAS. The results confirm that the plant substrates and temperature affect the population size of the BCA following application; temperature also affects the preventative efficacy of BCA against .
PubMed: 37836169
DOI: 10.3390/plants12193430 -
International Journal of Molecular... Sep 2023Ulcerative colitis (UC), a subtype of inflammatory bowel disease, is a chronic gastrointestinal inflammatory disease with unclear etiology and pathophysiology. Herein,...
Ulcerative colitis (UC), a subtype of inflammatory bowel disease, is a chronic gastrointestinal inflammatory disease with unclear etiology and pathophysiology. Herein, we determined the effects of extracellular polysaccharides purified from SM-2001 (Polycan) on tight junction protein expression, inflammation, and apoptosis in a dextran sodium sulfate (DSS)-induced acute colitis model. Fifty mice were divided into normal, DSS, DSS + Polycan 250 mg/kg (Polycan 250), DSS + Polycan 500 mg/kg (Polycan 500), and DSS + 5-aminosalicylic acid 100 mg/kg (5-ASA) groups. Their body weights, colon lengths, histological changes in colon tissue, and tight junction function were observed. Results showed that Polycan 250, Polycan 500, and 5-ASA significantly inhibited body weight loss compared with DSS. Similar to 5-ASA, Polycan 500 exhibited preventive effects on colon length shortening and histological changes in colon tissues. Polycan inhibited the DSS-induced decrease in fluorescein isothiocyanate-dextran permeability and myeloperoxidase activity. Moreover, Polycan significantly recovered serum cytokine (e.g., tumor necrosis factor-α, interleukin (IL)-6, and IL-1β) or mRNA expression in colon tissue compared with DSS. Polycan also inhibited apoptosis by reducing caspase-3 activity and the Bcl-2 associated X/B-cell lymphoma 2 (Bcl-2) ratio. Additionally, DSS treatment significantly reduced microbial abundance and diversity, but the administration of Polycan reversed this effect. Collectively, Polycan protected intestinal barrier function and inhibited inflammation and apoptosis in DSS-induced colitis.
Topics: Animals; Mice; Colitis, Ulcerative; Dextrans; Glucans; beta-Glucans; Colitis; Colon; Inflammation; Interleukin-6; Mesalamine; Proto-Oncogene Proteins c-bcl-2; Dextran Sulfate; Disease Models, Animal; Mice, Inbred C57BL
PubMed: 37834221
DOI: 10.3390/ijms241914773