-
Scientific Data Jun 2024Global Plate Models are widely used in the Earth Sciences to reconstruct the past geographic position of geological and palaeontological samples. However, the...
Global Plate Models are widely used in the Earth Sciences to reconstruct the past geographic position of geological and palaeontological samples. However, the application of Global Plate Models to retrieve 'palaeocoordinates' is not trivial. Different Global Plate Models exist which vary in their complexity, spatiotemporal coverage, reference frame, and intended use. Consequently, careful consideration of which models are appropriate for any given research question is required. Here, we document and provide access to reconstruction datasets for five Global Plate Models in the palaeomagnetic reference frame. These datasets provide 'true' palaeolatitudes for three discrete global grids reconstructed at one-million-year intervals throughout the Phanerozoic (540-0 Ma), offering three key benefits for the Earth Science community: (1) allow users to look up palaeocoordinates for their samples (e.g. fossil occurrences) through simple indexing without having to learn additional software packages; (2) provide palaeocoordinates which have been generated consistently with thorough documentation; (3) provide static files which preserve model output and which can be used to evaluate palaeogeographic differences between Global Plate Models.
PubMed: 38951561
DOI: 10.1038/s41597-024-03468-w -
Journal of Assisted Reproduction and... Jul 2024
PubMed: 38951361
DOI: 10.1007/s10815-024-03187-6 -
Methods in Molecular Biology (Clifton,... 2024Insect cell expression has been successfully used for the production of viral antigens as part of commercial vaccine development. As expression host, insect cells offer...
Insect cell expression has been successfully used for the production of viral antigens as part of commercial vaccine development. As expression host, insect cells offer advantage over bacterial system by presenting the ability of performing post-translational modifications (PTMs) such as glycosylation and phosphorylation thus preserving the native functionality of the proteins especially for viral antigens. Insect cells have limitation in exactly mimicking some proteins which require complex glycosylation pattern. The recent advancement in insect cell engineering strategies could overcome this limitation to some extent. Moreover, cost efficiency, timelines, safety, and process adoptability make insect cells a preferred platform for production of subunit antigens for human and animal vaccines. In this chapter, we describe the method for producing the SARS-CoV2 spike ectodomain subunit antigen for human vaccine development and the virus like particle (VLP), based on capsid protein of porcine circovirus virus 2 (PCV2d) antigen for animal vaccine development using two different insect cell lines, SF9 & Hi5, respectively. This methodology demonstrates the flexibility and broad applicability of insect cell as expression host.
Topics: Animals; Baculoviridae; Antigens, Viral; Sf9 Cells; Humans; Spike Glycoprotein, Coronavirus; Recombinant Proteins; Cell Line; SARS-CoV-2; Vaccines, Virus-Like Particle; Capsid Proteins; Glycosylation; Insecta; Spodoptera; COVID-19 Vaccines
PubMed: 38951334
DOI: 10.1007/978-1-0716-3961-0_12 -
Neurochemical Research Jul 2024The purpose of this study is to explore the shared molecular pathogenesis of traumatic brain injury (TBI) and high-grade glioma and investigate the mechanism of propofol...
The purpose of this study is to explore the shared molecular pathogenesis of traumatic brain injury (TBI) and high-grade glioma and investigate the mechanism of propofol (PF) as a potential protective agent. By analyzing the Chinese glioma genome atlas (CGGA) and The Cancer Genome Atlas (TCGA) databases, we compared the transcriptomic data of high-grade glioma and TBI patients to identify common pathological mechanisms. Through bioinformatics analysis, in vitro experiments and in vivo TBI model, we investigated the regulatory effect of PF on extracellular matrix (ECM)-related genes through Prrx1 under oxidative stress. The impact of PF on BBB integrity under oxidative stress was investigated using a dual-layer BBB model, and we explored the protective effect of PF on tight junction proteins and ECM-related genes in mice after TBI. The study found that high-grade glioma and TBI share ECM instability as an important molecular pathological mechanism. PF stabilizes the ECM and protects the BBB by directly binding to Prrx1 or indirectly regulating Prrx1 through miRNAs. In addition, PF reduces intracellular calcium ions and ROS levels under oxidative stress, thereby preserving BBB integrity. In a TBI mouse model, PF protected BBB integrity through up-regulated tight junction proteins and stabilized the expression of ECM-related genes. Our study reveals the shared molecular pathogenesis between TBI and glioblastoma and demonstrate the potential of PF as a protective agent of BBB. This provides new targets and approaches for the development of novel neurotrauma therapeutic drugs.
PubMed: 38951281
DOI: 10.1007/s11064-024-04202-z -
Die Naturwissenschaften Jul 2024Studies of reproductive biology and resources availability to floral visitors by plant species are important to understand the plant-pollinator interactions that drive...
Studies of reproductive biology and resources availability to floral visitors by plant species are important to understand the plant-pollinator interactions that drive species adaptation. We aim to understand the relationship between reproduction mechanisms of Deuterocohnia meziana (Bromeliaceae) and pollinators. The species occurs in Bolivia and Paraguay, and it is the only species of the genus found in Brazil, where it is restricted to ironstone outcrops. These areas are currently threatened by the iron mining industry. Additionally, they face risks from fire occurrence and grazing by cattle. We analyzed the floral biology, reproductive system, phenology, and pollination ecology of a natural population of Deuterocohnia meziana, from ironstone outcrops in Brazil. The species exhibits diurnal anthesis, with stigma receptive throughout anthesis, and 77% of pollen viability. Deuterocohnia meziana produces relatively large amounts of nectar, especially early in the morning (32.8 ± 9.4 μl), with a mean sugar concentration of 23.5 (± 3.2) ºBrix. It is self-incompatible with a peak flowering occurring in August (dry season), although flowers are observed continuously throughout the year. The species exhibits two types of inflorescences, young and mature, among which an average of 13.1 and 3.6 flowers open per day, respectively. Hummingbirds and bees are the effective pollinators, although butterflies and ants also visit D. meziana flowers. The species is reliant on exogenous pollen and pollinators for fruit set. The continuous conservation of D. meziana populations and their communities is essential for preserving plant-pollinator mutualism and the floral community adapted to ironstone outcrops.
Topics: Endangered Species; Pollination; Brazil; Bromeliaceae; Animals; Reproduction; Flowers
PubMed: 38951237
DOI: 10.1007/s00114-024-01924-6 -
Abdominal Radiology (New York) Jul 2024To describe residual arterial supply to the stomach after bariatric surgery via a systematic arterial-phase CT assessment approach that can aid in diagnosis and...
PURPOSE
To describe residual arterial supply to the stomach after bariatric surgery via a systematic arterial-phase CT assessment approach that can aid in diagnosis and treatment of postoperative complications and facilitate planning for future procedures.
METHODS
Arterial-phase CT of 46 patients who underwent Roux-en-Y gastric bypass (RYGB) or sleeve gastrectomy (SG) at 3 academic institutions were retrospectively reviewed to assess patency of left gastric artery (LGA), right gastric artery (RGA), gastroepiploic artery (GEA), and left inferior phrenic artery (LIPA) and presence of gastric perforators.
RESULTS
In 25 RYGB and 21 SG patients, mean diameters were LGA 2.2 ± 0.4 mm, RGA 1.6 ± 0.5 mm, and GEA 1.7 ± 0.4 mm. On RYGB scans, all LGAs, RGAs, and 24/25 (96%) of GEAs were identified. Excellent to good patency was seen in 20/25 (80%) LGAs, 21/25 (84%) RGAs, and 23/24 (96%) GEAs. On SG scans, all LGAs, 18/21 (86%) of RGAs, and 20/21 (95%) GEAs were identified. Excellent to good patency was seen in 17/21 (81%) LGAs, 15/18 (83%) RGAs, and 20/20 (100%) GEAs. In terms of gastric perforators, LGA supply was seen on 23/25 (92%) of RYGB and 17/17 (100%) of SG scans. RGA supply was seen on 13/21 (62%) RYGB and 9/18 (50%) SG scans. GEA supply was seen on 19/23 (83%) RYGB scans. No gastric supply via GEA was seen on SG scans.
CONCLUSION
In this study, arterial supply to the stomach through the LGA was consistently identified in all RYGB and SG cases, indicating an uncomplicated surgical approach with regard to preserving the LGA. Dedicated CT angiography protocol or catheter-directed angiography is recommended for accurate and comprehensive assessment of the gastric blood supply, particularly before surgical re-intervention.
PubMed: 38951233
DOI: 10.1007/s00261-024-04467-6 -
Scientific Reports Jul 2024Artificially extracted agricultural phenotype information exhibits high subjectivity and low accuracy, while the utilization of image extraction information is...
Artificially extracted agricultural phenotype information exhibits high subjectivity and low accuracy, while the utilization of image extraction information is susceptible to interference from haze. Furthermore, the effectiveness of the agricultural image dehazing method used for extracting such information is limited due to unclear texture details and color representation in the images. To address these limitations, we propose AgriGAN (unpaired image dehazing via a cycle-consistent generative adversarial network) for enhancing the dehazing performance in agricultural plant phenotyping. The algorithm incorporates an atmospheric scattering model to improve the discriminator model and employs a whole-detail consistent discrimination approach to enhance discriminator efficiency, thereby accelerating convergence towards Nash equilibrium state within the adversarial network. Finally, by training with network adversarial loss + cycle consistent loss, clear images are obtained after dehazing process. Experimental evaluations and comparative analysis were conducted to assess this algorithm's performance, demonstrating improved accuracy in dehazing agricultural images while preserving detailed texture information and mitigating color deviation issues.
PubMed: 38951207
DOI: 10.1038/s41598-024-65540-0 -
Nature Communications Jun 2024Cancer resistance to immune checkpoint inhibitors motivated investigations into leveraging the immunostimulatory properties of radiotherapy to overcome immune evasion...
Cancer resistance to immune checkpoint inhibitors motivated investigations into leveraging the immunostimulatory properties of radiotherapy to overcome immune evasion and to improve treatment response. However, clinical benefits of radiotherapy-immunotherapy combinations have been modest. Routine concomitant tumor-draining lymph node irradiation (DLN IR) might be the culprit. As crucial sites for generating anti-tumor immunity, DLNs are indispensable for the in situ vaccination effect of radiotherapy. Simultaneously, DLN sparing is often not feasible due to metastatic spread. Using murine models of metastatic disease in female mice, here we demonstrate that delayed (adjuvant), but not neoadjuvant, DLN IR overcomes the detrimental effect of concomitant DLN IR on the efficacy of radio-immunotherapy. Moreover, we identify IR-induced disruption of the CCR7-CCL19/CCL21 homing axis as a key mechanism for the detrimental effect of DLN IR. Our study proposes delayed DLN IR as a strategy to maximize the efficacy of radio-immunotherapy across different tumor types and disease stages.
Topics: Animals; Immune Checkpoint Inhibitors; Female; Mice; Lymph Nodes; Cell Line, Tumor; Immunotherapy; Mice, Inbred C57BL; Lymphatic Irradiation; Disease Models, Animal; Combined Modality Therapy; Humans; Receptors, CCR7; Neoplasm Metastasis
PubMed: 38951172
DOI: 10.1038/s41467-024-49873-y -
Scientific Reports Jul 2024The formation of planets in our solar system encompassed various stages of accretion of planetesimals that formed in the protoplanetary disk within the first few million...
The formation of planets in our solar system encompassed various stages of accretion of planetesimals that formed in the protoplanetary disk within the first few million years at different distances to the sun. Their chemical diversity is reflected by compositionally variable meteorite groups from different parent bodies. There is general consensus that their formation location is roughly constrained by a dichotomy of nucleosynthetic isotope anomalies, relating carbonaceous (C) meteorite parent bodies to the outer protoplanetary disk and the non-carbonaceous (NC) parent bodies to an origin closer to the sun. It is a common idea, that in these inner parts of the protoplanetary disks, planetesimal accretion processes were faster. Testing such scenarios requires constraining formation ages of meteorite parent bodies. Although isotopic age dating can yield precise formation ages of individual mineral constituents of meteorites, such ages frequently represent mineral cooling ages that can postdate planetesimal formation by millions or tens of millions of years, depending on the cooling history of individual planetesimals at different depths. Nevertheless, such cooling ages provide a detailed thermal history which can be fitted by thermal evolution models that constrain the formation age of individual parent bodies. Here we apply state-of-the-art thermal evolution models to constrain planetesimal formation times particular in the outer solar system formation region of C meteorites. We infer a temporally distributed accretion of various parent bodies from Ma to Ma after solar system formation, with 3.7 Ma and Ma for the parent bodies of CR1-3 chondrites and the Flensburg carbonaceous chondrite, and and Ma for the parent bodies of differentiated achondrites NWA 6704 and NWA 011, respectively. This implies that accretion processes in the C reservoir started as early as in the NC reservoir and were operating throughout typical protoplanetary disk lifetimes, thereby producing differentiated parent bodies with carbonaceous compositions in addition to undifferentiated C chondrite parent bodies. The accretion times correlate inversely with the degree of the meteorites' alteration, metamorphism, or differentiation. The accretion times for the CM, CI, Ryugu, and Tafassite parent bodies of 3.8 Ma, 3.8 Ma, Ma, and 1.1 Ma, respectively, fit well into this correlation in agreement with the thermal and alteration conditions suggested by these meteorites. Our results indicate that individual planetesimals formed rapidly (i.e., within Ma), however, distinct planetesimals formed recurrently throughout the total lifetime of the protoplanetary disk. Rapid individual formation is consistent with streaming instabilities assisted by gravitational collapse. However, obviously not the total dust inventory was consumed at early disk evolution stages, so there must have been some delay mechanisms, e.g. collisional destruction of precursor aggregates due to high impact velocities induced by radial drift phenomena. This counterbalance enabled late ( Ma) accretion of C planetesimals beyond the snow line which escaped severe planetesimal heating and volatile loss, hence, preserving their volatiles, especially water. Only this delayed formation of water-rich planetesimals allowed Earth to accrete sufficient water to become a habitable planet, preventing it from being a bone dry planet.
PubMed: 38951135
DOI: 10.1038/s41598-024-63768-4 -
Journal of Clinical Periodontology Jul 2024To identify an optimized strategy for the large-scale production of nanovesicles (NVs) that preserve the biological properties of exosomes (EXOs) for use in periodontal...
AIM
To identify an optimized strategy for the large-scale production of nanovesicles (NVs) that preserve the biological properties of exosomes (EXOs) for use in periodontal regeneration.
MATERIALS AND METHODS
NVs from dental follicle stem cells (DFSCs) were prepared through extrusion, and EXOs from DFSCs were isolated. The yield of both extruded NVs (eNVs) and EXOs were quantified through protein concentration and particle number analyses. Their pro-migration, pro-proliferation and pro-osteogenesis capacities were compared subsequently in vitro. Additionally, proteomics analysis was conducted. To further evaluate the periodontal regeneration potential of eNVs and EXOs, they were incorporated into collagen sponges and transplanted into periodontal defects in rats. In vivo imaging and H&E staining were utilized to verify their biodistribution and safety. Micro-Computed Tomography analysis and histological staining were performed to examine the regeneration of periodontal tissues.
RESULTS
The yield of eNVs was nearly 40 times higher than that of EXOs. Interestingly, in vitro experiments indicated that the pro-migration and pro-proliferation abilities of eNVs were superior, and the pro-osteogenesis potential was comparable to EXOs. More importantly, eNVs exhibited periodontal regenerative potential similar to that of EXOs.
CONCLUSIONS
Extrusion has proven to be an efficient method for generating numerous eNVs with the potential to replace EXOs in periodontal regeneration.
PubMed: 38951121
DOI: 10.1111/jcpe.14036