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Journal of Chromatography. A May 2024Birds are excellent bioindicators of environmental pollution, and blood provides information on contaminant exposure, although its analysis is challenging because of the...
Optimization and uncertainty assessment of a gas chromatography coupled to Orbitrap mass spectrometry method to determine organic contaminants in blood: A case study of an endangered seabird.
Birds are excellent bioindicators of environmental pollution, and blood provides information on contaminant exposure, although its analysis is challenging because of the low volumes that can be sampled. The objective of the present study was to optimize and validate a miniaturized and functional extraction and analytical method based on gas chromatography coupled to Orbitrap mass spectrometry (GCOrbitrap-MS) for the trace analysis of contaminants in avian blood. Studied compounds included 25 organochlorine pesticides (OCPs), 6 polychlorinated biphenyls (PCBs), 8 polybrominated diphenyl ethers (PBDEs) and 15 polycyclic aromatic hydrocarbons (PAHs). Four extraction and clean-up conditions were optimized and compared in terms of efficiency, accuracy, and uncertainty assessment. Extraction with hexane:dichloromethane and miniaturized Florisil pipette clean-up was the most adequate considering precision and accuracy, time, and costs, and was thereafter used to analyse 20 blood samples of a pelagic seabird, namely the Bermuda petrel (Pterodroma cahow). This species, endemic to the Northwest Atlantic, is among the most endangered seabirds of the region that in the '60 faced a decrease in the breeding success likely linked to a consistent exposure to dichloro-diphenyl-trichloroethane (DDT). Indeed, p,p'-DDE, the main DDT metabolite, was detected in all samples and ranged bewteen 1.13 and 6.87 ng/g wet weight. Other ubiquitous compounds were PCBs (ranging from 0.13 to 6.76 ng/g ww), hexachlorobenzene, and mirex, while PAHs were sporadically detected at low concentrations, and PBDEs were not present. Overall, the extraction method herein proposed allowed analysing very small blood volumes (∼ 100 µL), thus respecting ethical principles prioritising the application of less-invasive sampling protocols, fundamental when studying threatened avian species.
Topics: Animals; Gas Chromatography-Mass Spectrometry; Pesticides; Birds; Hydrocarbons, Chlorinated; Polychlorinated Biphenyls; Halogenated Diphenyl Ethers; Polycyclic Aromatic Hydrocarbons; Endangered Species; Environmental Monitoring; Environmental Pollutants
PubMed: 38604058
DOI: 10.1016/j.chroma.2024.464870 -
BMC Bioinformatics Nov 2023Messenger RNA (mRNA) has an essential role in the protein production process. Predicting mRNA expression levels accurately is crucial for understanding gene regulation,...
Messenger RNA (mRNA) has an essential role in the protein production process. Predicting mRNA expression levels accurately is crucial for understanding gene regulation, and various models (statistical and neural network-based) have been developed for this purpose. A few models predict mRNA expression levels from the DNA sequence, exploiting the DNA sequence and gene features (e.g., number of exons/introns, gene length). Other models include information about long-range interaction molecules (i.e., enhancers/silencers) and transcriptional regulators as predictive features, such as transcription factors (TFs) and small RNAs (e.g., microRNAs - miRNAs). Recently, a convolutional neural network (CNN) model, called Xpresso, has been proposed for mRNA expression level prediction leveraging the promoter sequence and mRNAs' half-life features (gene features). To push forward the mRNA level prediction, we present miREx, a CNN-based tool that includes information about miRNA targets and expression levels in the model. Indeed, each miRNA can target specific genes, and the model exploits this information to guide the learning process. In detail, not all miRNAs are included, only a selected subset with the highest impact on the model. MiREx has been evaluated on four cancer primary sites from the genomics data commons (GDC) database: lung, kidney, breast, and corpus uteri. Results show that mRNA level prediction benefits from selected miRNA targets and expression information. Future model developments could include other transcriptional regulators or be trained with proteomics data to infer protein levels.
Topics: MicroRNAs; RNA, Messenger; Mirex; Gene Expression Regulation; Transcription Factors; Gene Expression Profiling
PubMed: 37993778
DOI: 10.1186/s12859-023-05560-1 -
Environmental Research Jan 2024Organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCB), they have contributed to the exposure of women to persistent organic pollutants (POPs). These...
Placental concentrations of xenoestrogenic organochlorine pesticides and polychlorinated biphenyls and assessment of their xenoestrogenicity in the PA-MAMI mother-child cohort.
BACKGROUND
Organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCB), they have contributed to the exposure of women to persistent organic pollutants (POPs). These compounds can cross the placental barrier and interfere with the hormonal system of newborns.
AIM
To determine concentrations of OCPs and PCBs and their xenoestrogenic activity in placentas of women from the PA-MAMI cohort of Panama.
METHODS
Thirty-nine placenta samples from women in the Azuero peninsula (Panama) were analyzed. Five OCPs [p-p'-dichlorodiphenyldichloroethylene (p-p'-DDE), beta-hexachlorohexane (β-HCH), γ-hexachlorohexane (lindane), hexachlorobenzene (HCB) and mirex] and three PCB congeners (PCB-138, PCB-153 and PCB-180) were quantified in placenta extracts. The xenoestrogenic activity of extracts was assessed with the E-Screen bioassay to estimate the total effective xenoestrogen burden (TEXB).
RESULTS
All placental samples were positive for at least three POP residues and >70% for at least six. The frequencies of quantified OCPs ranged from 100% for p,p'-DDE and HCB to 30.8% for β-HCH. The highest median concentration was for lindane (380.0 pg/g placenta), followed by p,p'-DDE (280.0 pg/g placenta), and HCB (90.0 pg/g placenta). Exposure to p,p'-DDE was associated with greater meat consumption, suggesting that animal fat is a major source of exposure to DDT metabolites. The frequency of detected PCBs ranged between 70 and 90%; the highest median concentration was for PCB 138 (17.0 pg/g placenta), followed by PCB 153 (16.0 pg/g placenta). All placentas were positive in the estrogenicity bioassay with a median TEXB-α of 0.91 pM Eeq/g of placenta. Exposure to lindane was positively associated with the xenoestrogenicity of TEXB- α, whereas this association was negative in the case of exposure to PCB 153.
CONCLUSIONS
To our best knowledge, this study contributes the first evidence on the presence of POPs and xenoestrogenic burden in placentas from Latin-American women. Given concerns about the consequences of prenatal exposure to these compounds on children's health, preventive measures are highly recommended to eliminate or minimize the risk of OCP exposure during pregnancy.
Topics: Infant, Newborn; Animals; Female; Humans; Pregnancy; Polychlorinated Biphenyls; Hexachlorocyclohexane; Dichlorodiphenyl Dichloroethylene; Hexachlorobenzene; DDT; Placenta; Hydrocarbons, Chlorinated; Pesticides; Environmental Pollutants; Mother-Child Relations
PubMed: 37977273
DOI: 10.1016/j.envres.2023.117622 -
Molecules (Basel, Switzerland) Jul 2023A subcritical water degradation and extraction method was developed to remediate environmental soils contaminated by highly recalcitrant organochlorine pollutants....
A subcritical water degradation and extraction method was developed to remediate environmental soils contaminated by highly recalcitrant organochlorine pollutants. Hydrogen peroxide was used to effectively decompose organochlorine pollutants under subcritical water conditions. As a method optimization study, the static wet oxidation of chlorophenols was first performed in subcritical water with and without added hydrogen peroxide. Complete oxidation was achieved using an added oxidant, and thus, the oxidation and extraction of chlorophenols from a sand matrix was then attempted. Complete oxidation and extraction with added oxidant were achieved within 30 min at 100 °C. We then investigated the subcritical water degradation and extraction of dieldrin, mirex, and p,p'-DDD. These organochlorine pesticides were not as easily oxidized as the chlorophenols, and the benefit of adding hydrogen peroxide was only clearly observed at 200 °C. Approximately a 20% increase in degradation was noted for each pesticide and insecticide at this temperature. Unfortunately, this difference was not observed with an increase in temperature to 250 °C, except in some cases, where the amount of degradation byproducts was reduced. Dieldrin and p,p'-DDD were essentially destroyed at 250 °C, while all the pesticides and the insecticides were completely removed from the sand at this temperature. The proposed method was then used to remediate a soil sample highly contaminated with DDT. The soil was obtained from the grounds of an old DDT mixing facility in Virginia and has been aging for several decades. Not only was 100% removal of DDT from this soil achieved using the proposed method at 250 °C, but also, the extracted DDT was completely destroyed during the process. The proposed remediation method, therefore, demonstrates a high potential as an efficient and environmentally sound technique for the detoxification of soils.
PubMed: 37513317
DOI: 10.3390/molecules28145445 -
Cell Reports Apr 2023In metazoan cells, DNA replication initiates from thousands of genomic loci scattered throughout the genome called DNA replication origins. Origins are strongly...
In metazoan cells, DNA replication initiates from thousands of genomic loci scattered throughout the genome called DNA replication origins. Origins are strongly associated with euchromatin, particularly open genomic regions such as promoters and enhancers. However, over a third of transcriptionally silent genes are associated with DNA replication initiation. Most of these genes are bound and repressed by the Polycomb repressive complex-2 (PRC2) through the repressive H3K27me3 mark. This is the strongest overlap observed for a chromatin regulator with replication origin activity. Here, we asked whether Polycomb-mediated gene repression is functionally involved in recruiting DNA replication origins to transcriptionally silent genes. We show that the absence of EZH2, the catalytic subunit of PRC2, results in increased DNA replication initiation, specifically in the vicinity of EZH2 binding sites. The increase in DNA replication initiation does not correlate with transcriptional de-repression or the acquisition of activating histone marks but does correlate with loss of H3K27me3 from bivalent promoters.
Topics: Animals; Histones; Enhancer of Zeste Homolog 2 Protein; Polycomb Repressive Complex 2; Chromatin; DNA Replication; DNA
PubMed: 36995935
DOI: 10.1016/j.celrep.2023.112280 -
Chemosphere May 2023In support of the United Nations Environment Programme (UNEP) global monitoring plan under the Stockholm Convention concentrations of persistent organic pollutants...
In support of the United Nations Environment Programme (UNEP) global monitoring plan under the Stockholm Convention concentrations of persistent organic pollutants (POPs) were determined during two years in air from 42 countries in Asia, Africa, Latin America, and the Pacific by using polyurethane foams installed in passive samplers. The compounds included were polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), polybrominated diphenylethers (PBDEs), one polybrominated biphenyl and hexabromocyclododecane (HBCD) diastereomers. Total-DDT and PCBs were the highest in concentrations in about 50% of the samples, which shows their high persistency. Total DDT in air from the Solomon Islands ranged from 200 to 600 ng/polyurethane foam disk (PUF). However, at most locations, a decreasing trend is observed for PCBs, DDT and most other OCPs. Patterns varied per country with e.g. elevated dieldrin in air from Barbados and chlordane in air from the Philippines. A number of OCPs, such as heptachlor and its epoxides, some other chlordanes, mirex and toxaphene have decreased down to almost undetectable levels. PBB153 was hardly found and penta and octa--mix related PBDEs were also relatively low at most locations. HBCD and the decabromodiphenylether were more prominent at many locations and may even still increase. To draw more holistic conclusions more colder climate countries should be included in this program.
Topics: Polychlorinated Biphenyls; Persistent Organic Pollutants; DDT; Halogenated Diphenyl Ethers; Latin America; Environmental Monitoring; Air Pollutants; Hydrocarbons, Chlorinated; Pesticides; Chlordan; Africa
PubMed: 36878366
DOI: 10.1016/j.chemosphere.2023.138271 -
Environment International Mar 2023The extensive usage of pesticides has led to a ubiquitous exposure in the Chinese general population. Previous studies have demonstrated developmental neurotoxicity...
BACKGROUND
The extensive usage of pesticides has led to a ubiquitous exposure in the Chinese general population. Previous studies have demonstrated developmental neurotoxicity associated with prenatal exposure to pesticides.
OBJECTIVES
We aimed to delineate the landscape of internal pesticides exposure levels from pregnant women's blood serum samples, and to identify the specific pesticides associated with the domain-specific neuropsychological development.
METHODS
Participants included 710 mother-child pairs in a prospective cohort study initiated and maintained in Nanjing Maternity and Child Health Care Hospital. Maternal spot blood samples were collected at enrollment. Leveraging on an accurate, sensitive and reproducible analysis method for 88 pesticides, a total of 49 pesticides were measured simultaneously using gas chromatography-triple quadrupole tandem mass spectrometry (GC-MS/MS). After implementing a strict quality control (QC) management, 29 pesticides were reported. We assessed neuropsychological development in 12-month-old (n = 172) and 18-month-old (n = 138) children using the Ages and Stages Questionnaire (ASQ), Third Edition. Negative binomial regression models were used to investigate the associations between prenatal exposure to pesticides and ASQ domain-specific scores at age 12 and 18 months. Restricted cubic spline (RCS) analysis and generalized additive models (GAMs) were fitted to evaluate non-linear patterns. Longitudinal models with generalized estimating equations (GEE) were conducted to account for correlations among repeated observations. Weighted quantile sum (WQS) regression and Bayesian kernel machine regression (BKMR) were applied to examining the joint effect of the mixture of pesticides. Several sensitivity analyses were performed to assess the robustness of the results.
RESULTS
We observed that prenatal exposure to chlorpyrifos was significantly associated with a 4 % decrease in the ASQ communication scores both at age 12 months (RR, 0.96; 95 % CI, 0.94-0.98; P < 0.001) and 18 months (RR, 0.96; 95 % CI, 0.93-0.99; P < 0.01). In the ASQ gross motor domain, higher concentrations of mirex (RR, 0.96; 95 % CI, 0.94-0.99, P < 0.01 for 12-month-old children; RR, 0.98; 95 % CI, 0.97-1.00, P = 0.01 for 18-month-old children), and atrazine (RR, 0.97; 95 % CI, 0.95-0.99, P < 0.01 for 12-month-old children; RR, 0.99; 95 % CI, 0.97-1.00, P = 0.03 for 18-month-old children) were associated with decreased scores. In the ASQ fine motor domain, higher concentrations of mirex (RR, 0.98; 95 % CI, 0.96-1.00, P = 0.04 for 12-month-old children; RR, 0.98; 95 % CI, 0.96-0.99, P < 0.01 for 18-month-old children), atrazine (RR, 0.97; 95 % CI, 0.95-0.99, P < 0.001 for 12-month-old children; RR, 0.98; 95 % CI, 0.97-1.00, P = 0.01 for 18-month-old children), and dimethipin (RR, 0.94; 95 % CI, 0.89-1.00, P = 0.04 for 12-month-old children; RR, 0.93; 95 % CI, 0.88-0.98, P < 0.01 for 18-month-old children) were associated with decreased scores. The associations were not modified by child sex. There was no evidence of statistically significant nonlinear relationships between pesticides exposure and RRs of delayed neurodevelopment (P > 0.05). Longitudinal analyses implicated the consistent findings.
CONCLUSION
This study gave an integrated picture of pesticides exposure in Chinese pregnant women. We found significant inverse associations between prenatal exposure to chlorpyrifos, mirex, atrazine, dimethipin and the domain-specific neuropsychological development (i.e., communication, gross motor and fine motor) of children at 12 and 18 months of age. These findings identified specific pesticides with high risk of neurotoxicity, and highlighted the need for priority regulation of them.
Topics: Humans; Female; Pregnancy; Infant; Infant, Newborn; Pesticides; Chlorpyrifos; Prenatal Exposure Delayed Effects; Prospective Studies; Mirex; Tandem Mass Spectrometry; Bayes Theorem; Atrazine; China; Neurotoxicity Syndromes; Maternal Exposure
PubMed: 36809709
DOI: 10.1016/j.envint.2023.107814 -
International Journal of Environmental... Jan 2023The Mohawks at Akwesasne have been highly exposed to polychlorinated biphenyls (PCBs), via releases from three aluminum foundries located near the reserve. They are also...
The Mohawks at Akwesasne have been highly exposed to polychlorinated biphenyls (PCBs), via releases from three aluminum foundries located near the reserve. They are also exposed to organochlorine pesticides, namely hexachlorobenzene (HCB), dichlorodiphenyldichloroethylene (DDE), and mirex. Previous studies have demonstrated reduced cognition in relation to total PCBs, but the effects of the mixtures of different PCB congener groups, HCB, DDE, and mirex on cognitive function have not been studied. Therefore, cognitive performance for executive function, scored via the digit symbol substitution test (DSST), in Mohawk adults aged 17-79 years ( = 301), was assessed in relation to serum concentrations of low-chlorinated PCBs, high-chlorinated PCBs, total PCBs, HCB, DDE, and mirex. We used mixture models employing the quantile-based g-computation method. The mixture effects of low-chlorinated PCBs, high-chlorinated PCBs, HCB, DDE, and mirex were significantly associated with 4.01 DSST scores decrements in the oldest age group, 47-79 years old. There were important contributions to mixture effects from low-chlorinated PCBs, high-chlorinated PCBs, and total PCBs, with smaller contributions of HCB and DDE. Our findings indicate that exposures to both low- and high-chlorinated PCBs increase the risk of cognitive decline in older adults, while DDE and HCB have less effect.
Topics: Aged; Humans; Middle Aged; Cognition; Environmental Exposure; Environmental Pollutants; Hexachlorobenzene; Hydrocarbons, Chlorinated; Indians, North American; Mirex; Pesticides; Polychlorinated Biphenyls
PubMed: 36673903
DOI: 10.3390/ijerph20021148 -
Chemosphere Mar 2023As part of the pan-Canadian Maternal-Infant Research on Environmental Chemicals (MIREC) study, human milk samples were collected between 2008 and 2011, and analyzed for...
As part of the pan-Canadian Maternal-Infant Research on Environmental Chemicals (MIREC) study, human milk samples were collected between 2008 and 2011, and analyzed for mirex, an organochlorine insecticide and flame retardant, in addition to dechlorane plus (syn- and anti-DDC-CO), the flame retardant replacement for mirex. Mirex was analyzed separately, using a method for the analysis of existing organochlorine insecticides, while the presence of DDC-CO isomers was determined using a method developed for the detection of emerging flame retardants. Mirex was detected in all samples analyzed (n = 298), while syn- and anti-DDC-CO were present in 61.0% and 79.5% of the samples, respectively (n = 541). Mirex concentrations have declined in human milk since the 1990s. Since this is the first pan-Canadian dataset reporting DDC-CO concentrations in human milk, no temporal comparisons can be made. Maternal age was correlated with concentrations of both compounds although parity did not impact concentrations of either analyte. Given the presence of this relatively recently identified flame retardant (DDC-CO) in human milk from women across Canada, studies to identify dominant sources of this compound are critical. Despite low concentrations of environmental chemicals in human milk from Canadian women, Health Canada supports breastfeeding of infants because of the important health benefits to both the mothers and their infants.
Topics: Female; Humans; Mirex; Environmental Monitoring; Milk, Human; Flame Retardants; Canada; Hydrocarbons, Chlorinated; Polycyclic Compounds
PubMed: 36623597
DOI: 10.1016/j.chemosphere.2023.137784 -
Chemosphere Feb 2023Human breast milk reflects body burden of chemicals and has been used for exposure assessment to estimate risks of humans from pollutants. Harmonized protocols for...
Human breast milk reflects body burden of chemicals and has been used for exposure assessment to estimate risks of humans from pollutants. Harmonized protocols for sampling and analysis of persistent organic pollutants (POPs) have become widely available after the entry-into-force of the Stockholm Convention on POPs and activities coordinated by the United Nations Environment Programme (UNEP). These protocols promote the generation of national pools consisting of breast milk from first mothers directed to assess at national level but have not been assessed comprehensively. Early surveys date back to the mid-1980s, but the majority of the pools and high numbers of POPs analytes were available after the year 2000. Our assessment of pools from 90 countries for 29 POPs showed declining time trends for almost all POPs and significant differences between all 5-year time periods. However, in general, the most recent data from samples collected between 2015 and 2019, were no longer different from the period immediately prior. The strongest declines were seen for POPs that have already been measured for more than 30 years, i.e., dioxin-like POPs and polychlorinated biphenyls (PCB). For certain initial and newly listed POPs, such as aldrin, endrin, mirex, toxaphene, α-HCH, chlordecone, endosulfan, pentachlorobenzene, hexachlorobutadiene, decabromo diphenyl ether, hexabromobiphenyl 153, and perfluorohexane sulfonate, the median values in pools were always zero, and some of them were never quantified in these human milk pools. Since these POPs may be present at national level, we recommend including all listed POPs into surveys related to the Stockholm Convention.
Topics: Female; Humans; Persistent Organic Pollutants; Milk, Human; Environmental Monitoring; Environmental Pollutants; Polychlorinated Biphenyls
PubMed: 36513202
DOI: 10.1016/j.chemosphere.2022.137484