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Journal of Vector Ecology : Journal of... Dec 2020Because isolated ecosystems contribute to species variability, especially oceanic island ecosystems, the present work focused on the study of the Bartonella species and...
Because isolated ecosystems contribute to species variability, especially oceanic island ecosystems, the present work focused on the study of the Bartonella species and haplotypes in Lanzarote and El Hierro, two Canary islands with evident bioclimatic differences between them. A total of 123 rodents and 110 fleas from two islands were screened for the presence of Bartonella by PCR analysis of the gltA and nuoG genes. The overall prevalence was 5.7% in rodents and 20.4% in fleas. A total of seven gltA-haplotypes was found in both rodents and fleas, belonging to the species Bartonella mastomydis and Bartonella tribocorum in Lanzarote, and to Bartonella rochalimae and Bartonella elizabethae in El Hierro, as well as recently described species Bartonella kosoyi in both islands. Besides, potential co-infections were detected based on the nuoG analysis. Further, Xenopsylla cheopis was the only flea species identified. Our study shows that isolated ecosystems such as the Canary Islands lead to the appearance of new Bartonella haplotypes along different biotopes, with diverse flea species involved in the spreading of the pathogen being of great relevance due to the zoonotic potential of the species found.
Topics: Animals; Bartonella; Haplotypes; Insect Vectors; Mice; Phylogeny; Rats; Spain; Xenopsylla
PubMed: 33207054
DOI: 10.1111/jvec.12396 -
Applied and Environmental Microbiology Apr 2023In this study, we investigated infection and its genetic diversity in rodents in Beitun, Xinjiang Uygur Autonomous Region, China. Small mammals were captured using snap...
In this study, we investigated infection and its genetic diversity in rodents in Beitun, Xinjiang Uygur Autonomous Region, China. Small mammals were captured using snap traps at four sampling sites in 2018. Spleen and liver tissues were collected and cultured to isolate strains. Whole-genome sequencing was performed on the strains identified as by gene PCR, and the average nucleotide identity (ANI) of the genomes was calculated by using FastANI v1.33. Phylogenetic trees were constructed for the samples positive for spp. by the PCR assay based on 1,290-bp genes, 2,903-bp genes, and core-genome single nucleotide polymorphisms (SNPs). Among 66 rodents, 11 were positive for , with an infection rate of 16.67%. The rodent infection rates in different tissues (χ = 2.133; = 0.242), species (χ = 9.631; = 0.141), and habitats (χ = 4.309; = 0.312) did not show statistical differences. spp. isolated from the rodents were phylogenetically divided into six clades (two different species were detected in two rodents). By comparing phylogenetic trees based on genes, genes, and SNPs, we found that the topological structures of several evolutionary trees are different. However, the strains isolated in this study were clustered into six clusters in different phylogenetic trees. Broad distributions and high genetic diversity of strains were observed among rodents in Beitun, Xinjiang. Rodent-borne species have been associated with zoonotic diseases. species such as Bartonella elizabethae, Bartonella grahamii, and Bartonella tribocorum can cause disease in humans. Humans can be infected by blood-sucking arthropods through the scratches and bites of an infected reservoir host or via contact with infectious rodents. Xinjiang is one of the provinces with the most abundant species of in China, but there are few reports about the prevalence of in the Beitun area. This research aims to investigate the occurrence and prevalence of infection in rodents at these sampling sites and provide a basis for the prevention and control of rodent species in Beitun and the surrounding areas of Xinjiang.
Topics: Animals; Humans; Rodentia; Phylogeny; Prevalence; Bartonella; Bartonella Infections; China
PubMed: 36951592
DOI: 10.1128/aem.01964-22 -
Veterinary World Jul 2022spp. are Gram-negative zoonotic bacteria that are transmitted to humans by several types of animal hosts, including rodents. Several studies have been conducted on the...
BACKGROUND AND AIM
spp. are Gram-negative zoonotic bacteria that are transmitted to humans by several types of animal hosts, including rodents. Several studies have been conducted on the prevalence of infections in rodents. However, the risk of rodent-associated spp. infection in humans remains unclear. This study aimed to estimate the prevalence and genetic heterogeneity of spp. in rodents and shrews from nine provinces of Thailand using culture and molecular techniques.
MATERIALS AND METHODS
A total of 860 blood samples from rodents and shrews across nine provinces of Thailand were collected from January 2013 to June 2016. spp. were isolated from all samples using conventional culture techniques and polymerase chain reaction. Phylogenetic tree analysis was used to align the sequences obtained from this study.
RESULTS
The prevalence of spp. in rodents and shrews was 11.5% (99/860, 95% confidence interval: 9.38-13.64%). The following nine species of were detected: , , , , spp. nov., spp. nov., , spp. nov., and . The prevalence of positive animals differed significantly among provinces.
CONCLUSION
To the best of our knowledge, the three novel spp. isolated from rodents and shrews across Thailand were detected for the first time in this study. Further studies on the epidemiology of infection in rodents and its interaction with human health should be conducted in accordance with the Thai government's "One Health" approach to humans, animals, and the environment.
PubMed: 36185510
DOI: 10.14202/vetworld.2022.1624-1631 -
Molecular Detection of Microorganisms Associated with Small Mammals and Their Ectoparasites in Mali.The American Journal of Tropical... Dec 2020Small mammals are the natural reservoirs for many zoonotic pathogens. Using molecular tools, we assessed the prevalence of bacteria and protozoans in small mammals and...
Small mammals are the natural reservoirs for many zoonotic pathogens. Using molecular tools, we assessed the prevalence of bacteria and protozoans in small mammals and their ectoparasites in Faladjè, Bougouni, and Bamoko, Mali. A total of 130 small mammals belonging to 10 different species were captured, of which 74 (56.9%) were infested by ectoparasites, including , , , sensu lato, and spp. nymphs. DNA of was found in 14/75 (18.7%), 6/48 (12.5%), and 3/7 (42.8%) small mammals from Faladjè, Bougouni, and Bamako, respectively. In Faladjè, DNA was detected in 31/68 (45.6%) of and 14/22 (63.6%) of . In Bougouni, it was found in 2/26 (7.7%) of and 10/42 (23.8%) of . The sequences of obtained from small mammals were close to those of , , and uncultured spp. In Faladjè, DNA was detected in 64.4% (29/45) of spp. ticks, 4.5% (2/44) of , 12.5% (1/8) of , and 1.5% (1/68) of . We found DNA of in from Faladjè and DNA of and in from Bougouni. The results of our study show that several small mammal species harbor and may serve as potential reservoirs of spp., likely to play a major role in the maintenance, circulation, and potential transmission of bacteria in Mali. The pathogenicity of these bacteria for humans or animals remains to be demonstrated.
Topics: Animals; Bacteria; Disease Reservoirs; Ectoparasitic Infestations; Mali; Mites; Phylogeny; Rodent Diseases; Rodentia; Siphonaptera; Ticks; Zoonoses
PubMed: 33146105
DOI: 10.4269/ajtmh.19-0727 -
Journal of Infection and Public Health Apr 2024Bartonellosis is a vector-borne and zoonotic diseases in humans, especially in immunocompromised individuals. However, there is no complete data about the geographical... (Review)
Review
Bartonellosis is a vector-borne and zoonotic diseases in humans, especially in immunocompromised individuals. However, there is no complete data about the geographical distribution of different species of Bartonella, as well as the status of its reservoirs, vectors, and human cases in most parts of the world. In this study, published reports related to Bartonella species from WHO-EMRO region countries were searched in different databases until October 2023. The eighteens different species of Bartonella were reported in WHO-EMRO countries including Bartonella henselae, Bartonella quintana, Bartonella elizabethae, Bartonella bovis, Bartonella clarridgeiae, Bartonella vinsonii, Bartonella doshiae, Bartonella taylorii, Bartonella rochalimae, Bartonella tribocorum, Bartonella rattimassiliensis, candidatus Bartonella merieuxii, candidatus Bartonella dromedarii, Bartonella acomydis, Bartonella jaculi, Bartonella coopersplainsensis and Bartonella koehlerae. Also, only human cases of B. henselae and B. quintana infections were reported from WHO-EMRO countries. The infections of Bartonella are important in the WHO-EMRO region, but they have been neglected by clinicians and healthcare systems.
Topics: Humans; Bartonella; World Health Organization; Mediterranean Region
PubMed: 38417187
DOI: 10.1016/j.jiph.2024.02.009 -
Frontiers in Microbiology 2021Taxonomic decisions within the order have relied heavily on the interpretations of highly conserved 16S rRNA sequences and DNA-DNA hybridizations (DDH). Currently,...
Taxonomic decisions within the order have relied heavily on the interpretations of highly conserved 16S rRNA sequences and DNA-DNA hybridizations (DDH). Currently, bacterial species are defined as including strains that present 95-96% of average nucleotide identity (ANI) and 70% of digital DDH (dDDH). Thus, ANI values from 520 genome sequences of type strains from species of order were computed. From the resulting 270,400 comparisons, a ≥95% cut-off was used to extract high identity genome clusters through enumerating maximal cliques. Coupling this graph-based approach with dDDH from clusters of interest, it was found that: (i) there are synonymy between and , and , "," and , , and , , and , , and , and and ; (ii) is not a synonym of ; (iii) "" subsp. and "" subsp. represent members of different species; (iv) the genome accessions GCF_003024615.1 (" LMG 6,125"), GCF_003024595.1 (" LMG 11,892"), GCF_003096615.1 (" DSM 760"), and GCF_000373025.1 (" R-602 sp") are not from the genuine type strains used for the respective species descriptions; and v) "" Py2 and "" KCTC 2,477 represent cases of misuse of the term "type strain". comb. nov. and the reclassification of as is also proposed. To facilitate the downstream analysis of large ANI matrices, we introduce here ProKlust ("Prokaryotic Clusters"), an R package that uses a graph-based approach to obtain, filter, and visualize clusters on identity/similarity matrices, with settable cut-off points and the possibility of multiple matrices entries.
PubMed: 33841347
DOI: 10.3389/fmicb.2021.614957