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Medical Physics Nov 2021The purpose of this study was to identify the cause of severe image artifacts that occurred during gantry rotation in a 0.35 T MRI-Linac by comparing measurements of...
PURPOSE
The purpose of this study was to identify the cause of severe image artifacts that occurred during gantry rotation in a 0.35 T MRI-Linac by comparing measurements of eddy currents, center frequency, and field inhomogeneities made with the gantry in motion and stationary.
METHODS
Gradient and B eddy currents were calculated from the free induction decays (FIDs) resulting from selective excitation at a temporal resolution of 200 ms/measurement. B eddy currents were also calculated from FIDs acquired with nonselective excitation at a temporal resolution of 100 ms/measurement. Center frequencies and B inhomogeneities were measured by acquiring FIDs with a repetition time (TR) of 290 ms. Cartesian and radial 2D true fast imaging with steady-state precession (TrueFISP) pulse sequences used in real-time MRI-guided radiation therapy (MR-IGRT) were acquired. To assess artifact severity, the normalized root mean square error (nRMSE) was calculated between a reference MRI (static gantry) and MRIs acquired during gantry rotation for each serial acquisition. Image artifacts were qualitatively graded as nominal, minor, or severe. Measurements were conducted while the gantry was rotated through its entire range for both clockwise and counterclockwise. Measurements during gantry rotation were compared to measurements with a stationary gantry (every 30°).
RESULTS
Severe image artifacts were observed 22-35% of the time while the gantry was rotating. Short time constant eddy currents were not affected by gantry rotation. The peak to peak center frequency and FWHM rose by factors of 13.2-14.5 and 1.1-1.6, respectively, for the rotating versus stationary gantry. The magnitude of the center frequency offset and field inhomogeneities depended on the direction of the gantry rotation.
CONCLUSIONS
Image artifacts during gantry rotation were primarily caused by center frequency variations and field inhomogeneities. Therefore, dynamic B compensation techniques should be able to reduce artifacts during gantry rotation.
Topics: Artifacts; Magnetic Fields; Magnetic Resonance Imaging; Particle Accelerators; Phantoms, Imaging; Rotation
PubMed: 34520081
DOI: 10.1002/mp.15226 -
Journal of Vision Feb 2024Why do moving objects appear rigid when projected retinal images are deformed non-rigidly? We used rotating rigid objects that can appear rigid or non-rigid to test...
Why do moving objects appear rigid when projected retinal images are deformed non-rigidly? We used rotating rigid objects that can appear rigid or non-rigid to test whether shape features contribute to rigidity perception. When two circular rings were rigidly linked at an angle and jointly rotated at moderate speeds, observers reported that the rings wobbled and were not linked rigidly, but rigid rotation was reported at slow speeds. When gaps, paint, or vertices were added, the rings appeared rigidly rotating even at moderate speeds. At high speeds, all configurations appeared non-rigid. Salient features thus contribute to rigidity at slow and moderate speeds but not at high speeds. Simulated responses of arrays of motion-energy cells showed that motion flow vectors are predominantly orthogonal to the contours of the rings, not parallel to the rotation direction. A convolutional neural network trained to distinguish flow patterns for wobbling versus rotation gave a high probability of wobbling for the motion-energy flows. However, the convolutional neural network gave high probabilities of rotation for motion flows generated by tracking features with arrays of MT pattern-motion cells and corner detectors. In addition, circular rings can appear to spin and roll despite the absence of any sensory evidence, and this illusion is prevented by vertices, gaps, and painted segments, showing the effects of rotational symmetry and shape. Combining convolutional neural network outputs that give greater weight to motion energy at fast speeds and to feature tracking at slow speeds, with the shape-based priors for wobbling and rolling, explained rigid and non-rigid percepts across shapes and speeds (R2 = 0.95). The results demonstrate how cooperation and competition between different neuronal classes lead to specific states of visual perception and to transitions between the states.
Topics: Humans; Motion Perception; Rotation; Visual Perception; Illusions; Pattern Recognition, Visual
PubMed: 38306112
DOI: 10.1167/jov.24.2.3 -
Communications Biology Sep 2022Clockwise rotation of the primitive heart tube, a process regulated by restricted left-sided Nodal signaling, is the first morphological manifestation of left-right...
Clockwise rotation of the primitive heart tube, a process regulated by restricted left-sided Nodal signaling, is the first morphological manifestation of left-right asymmetry. How Nodal regulates cell behaviors to drive asymmetric morphogenesis remains poorly understood. Here, using high-resolution live imaging of zebrafish embryos, we simultaneously visualized cellular dynamics underlying early heart morphogenesis and resulting changes in tissue shape, to identify two key cell behaviors: cell rearrangement and cell shape change, which convert initially flat heart primordia into a tube through convergent extension. Interestingly, left cells were more active in these behaviors than right cells, driving more rapid convergence of the left primordium, and thereby rotating the heart tube. Loss of Nodal signaling abolished the asymmetric cell behaviors as well as the asymmetric convergence of the left and right heart primordia. Collectively, our results demonstrate that Nodal signaling regulates the magnitude of morphological changes by acting on basic cellular behaviors underlying heart tube formation, driving asymmetric deformation and rotation of the heart tube.
Topics: Animals; Heart; Myocardium; Rotation; Zebrafish; Zebrafish Proteins
PubMed: 36131094
DOI: 10.1038/s42003-022-03826-7 -
Sensors (Basel, Switzerland) Oct 2022Target azimuth information can help further improve the accuracy of magnetic orientation, but the current periodic magnetic field generated by the magnetic beacon is...
Target azimuth information can help further improve the accuracy of magnetic orientation, but the current periodic magnetic field generated by the magnetic beacon is multivalued, so it is not suitable for azimuth measurement. According to the distribution of a rotating magnetic field and the phase angle measuring principle, we put forward a new magnetic source structure design of a multiple rotating permanent magnet array by adjusting the spacing d, the rotating speed ω and the initial rotation angle φ, and then verified the mathematical model using COMSOL simulation software. A triple structure was obtained by comparison (d3=3d1=3d2=43 m, d3=3d1=3d2=43 m, φ1=0, φ2=4π5 rad. φ3=π rad), which can produce a strong characteristic magnetic signal similar to a heart-shaped field pattern. Finally, a signal transceiver system was set up for the experiment. The experimental result shows that the waveform of the magnetic signal generated by the real beacon meets the requirement of having a unique maximum value and good directivity within a period, which proves the practical application effect of the structure.
Topics: Magnetics; Magnetic Fields; Rotation; Magnets; Software
PubMed: 36366004
DOI: 10.3390/s22218304 -
Journal of Vision Dec 2020It is believed that visual self-motion perception (vection) can be effectively induced only in the case where the inducer's motion is defined by luminance modulation. In...
It is believed that visual self-motion perception (vection) can be effectively induced only in the case where the inducer's motion is defined by luminance modulation. In this study, psychophysical experiments examining the potential effects of visual motion defined by features other than luminance on visual self-motion perception (vection) were conducted, employing orientation-defined rotation (so-called fractal rotation) as a visual inducer. The experiments clearly indicate that orientation-defined visual rotation can strongly induce an observer's perceived self-rotation (roll vection), although it was significantly weaker than that induced by luminance-defined rotation. In the case where the orientation and luminance rotations were combined and presented simultaneously, perceived self-rotation was mainly determined by the luminance rotation when both factors were set to rotate in consistent or inconsistent directions. These results suggest that feature-defined visual motion containing no luminance modulation has the potential to contribute to visual self-motion perception.
Topics: Female; Humans; Light; Male; Motion Perception; Orientation, Spatial; Psychophysics; Rotation; Visual Perception; Young Adult
PubMed: 33355597
DOI: 10.1167/jov.20.13.15 -
Journal of Neuroengineering and... Aug 2014After neurological injury, gait rehabilitation typically focuses on task oriented training with many repetitions of a particular movement. Modern rehabilitation devices,...
BACKGROUND
After neurological injury, gait rehabilitation typically focuses on task oriented training with many repetitions of a particular movement. Modern rehabilitation devices, including treadmills, augment gait rehabilitation. However, they typically provide gait training only in the forward direction of walking, hence the mechanisms associated with changing direction during turning are not practiced. A regular treadmill extended with the addition of rotation around the vertical axis is a simple device that may enable the practice of turning during walking. The objective of this study was to investigate to what extent pelvis and torso rotations in the transversal plane, as well as stride lengths while walking on the proposed rotating treadmill, resemble those in over ground turning.
METHODS
Ten neurologically and orthopedically intact subjects participated in the study. We recorded pelvis and torso rotations in the transversal plane and the stride lengths during over ground turning and while walking on a rotating treadmill in four experimental conditions of turning. The similarity between pelvis and torso rotations in over ground turning and pair-matching walking on the rotating treadmill was assessed using intra-class correlation coefficient (ICC - two-way mixed single measure model). Finally, left and right stride lengths in over ground turning as well as while walking on the rotating treadmill were compared using a paired t-test for each experimental condition.
RESULTS
An agreement analysis showed average ICC ranging between 0.9405 and 0.9806 for pelvis and torso rotation trajectories respectively, across all experimental conditions and directions of turning. The results of the paired t-tests comparing left and right stride lengths showed that the stride of the outer leg was longer than the stride of the inner leg during over ground turning as well as when walking on the rotating treadmill. In all experimental conditions these differences were statistically significant.
CONCLUSIONS
In this study we found that pelvis rotation and torso rotation are similar when turning over ground as compared to walking on a rotating treadmill. Additionally, in both modes of turning, we found that the stride length of the outer leg is significantly longer than the stride length of the inner leg.
Topics: Adult; Biomechanical Phenomena; Exercise Therapy; Humans; Male; Pelvis; Rotation; Torso; Walking; Young Adult
PubMed: 25151405
DOI: 10.1186/1743-0003-11-127 -
Biophysical Journal Oct 2014Cell migration plays a pivotal role in many physiologically important processes such as embryogenesis, wound-healing, immune defense, and cancer metastasis. Although...
Cell migration plays a pivotal role in many physiologically important processes such as embryogenesis, wound-healing, immune defense, and cancer metastasis. Although much effort has been directed toward motility of individual cells, the mechanisms underpinning collective cell migration remain poorly understood. Here we develop a collective motility model that incorporates cell mechanics and persistent random motions of individual cells to study coherent migratory motions in epithelial-like monolayers. This model, in absence of any external chemical signals, is able to explain coordinate rotational motion seen in systems ranging from two adherent cells to multicellular assemblies. We show that the competition between the active persistent force and random polarization fluctuation is responsible for the robust rotation. Passive mechanical coupling between cells is necessary but active chemical signaling between cells is not. The predicted angular motions also depend on the geometrical shape of the underlying substrate: cells exhibit collective rotation on circular substrates, but display linear back-and-forth motion on long and narrow substrates.
Topics: Biomechanical Phenomena; Cell Movement; Models, Biological; Rotation
PubMed: 25296305
DOI: 10.1016/j.bpj.2014.08.006 -
Journal of Neurophysiology Nov 2007Static head orientations obey Donders' law and are postulated to be rotations constrained by a Fick gimbal. Head oscillations can be voluntary or generated during...
Static head orientations obey Donders' law and are postulated to be rotations constrained by a Fick gimbal. Head oscillations can be voluntary or generated during natural locomotion. Whether the rotation axes of the voluntary oscillations or during locomotion are constrained by the same gimbal is unknown and is the subject of this study. Head orientation was monitored with an Optotrak (Northern Digital). Human subjects viewed visual targets wearing pin-hole goggles to achieve static head positions with the eyes centered in the orbit. Incremental rotation axes were determined for pitch and yaw by computing the velocity vectors during head oscillation and during locomotion at 1.5 m/s on a treadmill. Static head orientation could be described by a generalization of the Fick gimbal by having the axis of the second rotation rotate by a fraction, k, of the angle of the first rotation without a third rotation. We have designated this as a k-gimbal system. Incremental rotation axes for both pitch and yaw oscillations were functions of the pitch but not the yaw head positions. The pivot point for head oscillations was close to the midpoint of the interaural line. During locomotion, however, the pivot point was considerably lower. These findings are well explained by an implementation of the k-gimbal model, which has a rotation axis superimposed on a Fick-gimbal system. This could be realized physiologically by the head interface with the dens and occipital condyles during head oscillation with a contribution of the lower spine to pitch during locomotion.
Topics: Adult; Biomechanical Phenomena; Exercise Test; Eye Movements; Female; Head Movements; Humans; Locomotion; Male; Middle Aged; Models, Biological; Orientation; Posture; Reflex, Vestibulo-Ocular; Rotation; Spatial Behavior; Torque
PubMed: 17898142
DOI: 10.1152/jn.00764.2007 -
Journal of Neurophysiology Apr 2004Active translations of human subjects are nearly perfectly compensated by a combined rotation of both the eyes and the head. Because vestibuloocular reflex (VOR) gain is... (Comparative Study)
Comparative Study
Active translations of human subjects are nearly perfectly compensated by a combined rotation of both the eyes and the head. Because vestibuloocular reflex (VOR) gain is less than perfect during passive translations with near targets in head-fixed subjects, there is a possibility that the compensatory head rotation observed during natural behavior represents a vestibularly driven head reflex [translational vestibulocollic reflex (TVCR)]. The TVCR could elicit a horizontal rotation of the head during lateral linear acceleration that contributes to gaze stabilization. To investigate this hypothesis, we examined whether a horizontal rotation of the head contributes to gaze stability during passive lateral translation in rhesus monkeys whose head was free to rotate in the horizontal plane. Motion frequency was varied between 0.5 and 5 Hz while animals fixated targets at distances of 12-102 cm. We did not find evidence supporting the existence of a TVCR. Specifically, during motion at frequencies between 0.5 and 2 Hz, horizontal head rotation was negligible. During 4- and 5-Hz oscillations, there was a clear and consistent horizontal rotation of the head, but responses were always anticompensatory to gaze stabilization; that is, the head rotated in the same direction as head translation and oppositely to the direction of gaze rotation. Furthermore, there was no difference in gaze stability between the head-free and head-fixed conditions. Thus we conclude that the compensatory head rotation observed in human studies of active gaze movements could represent a strategy and/or a motor command contribution to gaze stabilization, rather than a simple vestibularly driven reflex.
Topics: Acceleration; Analysis of Variance; Animals; Distance Perception; Eye Movements; Fixation, Ocular; Head; Head Movements; Macaca mulatta; Motion; Reflex, Vestibulo-Ocular; Rotation
PubMed: 14657193
DOI: 10.1152/jn.01044.2003 -
Journal of the American Chemical Society Jul 2010Despite increased attention, little is known about how the crowded intracellular environment affects basic phenomena like protein diffusion. Here, we use NMR to quantify...
Despite increased attention, little is known about how the crowded intracellular environment affects basic phenomena like protein diffusion. Here, we use NMR to quantify the rotational and translational diffusion of a 7.4-kDa test protein, chymotrypsin inhibitor 2 (CI2), in solutions of glycerol, synthetic polymers, proteins, and cell lysates. As expected, translational diffusion and rotational diffusion decrease with increasing viscosity. In glycerol, for example, the decrease follows the Stokes-Einstein and Stokes-Einstein-Debye laws. Synthetic polymers cause negative deviation from the Stokes laws and affect translation more than rotation. Surprisingly, however, protein crowders have the opposite effect, causing positive deviation and reducing rotational diffusion more than translational diffusion. Indeed, bulk proteins severely attenuate the rotational diffusion of CI2 in crowded protein solutions. Similarly, CI2 diffusion in cell lysates is comparable to its diffusion in crowded protein solutions, supporting the biological relevance of the results. The rotational attenuation is independent of the size and total charge of the crowding protein, suggesting that the effect is general. The difference between the behavior of synthetic polymers and protein crowders suggests that synthetic polymers may not be suitable mimics of the intracellular environment. NMR relaxation data reveal that the source of the difference between synthetic polymers and proteins is the presence of weak interactions between the proteins and CI2. In summary, weak but nonspecific, noncovalent chemical interactions between proteins appear to fundamentally impact protein diffusion in cells.
Topics: Diffusion; Glycerol; Motion; Peptides; Plant Proteins; Polymers; Proteins; Rotation; Solutions; Viscosity
PubMed: 20560582
DOI: 10.1021/ja102296k